Pairwise Alignments

Query, 686 a.a., Protein PilJ from Pseudomonas putida KT2440

Subject, 521 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  164 bits (416), Expect = 7e-45
 Identities = 93/282 (32%), Positives = 151/282 (53%)

Query: 396 QLRDLVATINHSAVQVAAAVQDTQNTARQLAKASEHQAAQISEASEAVGDMVESIDRVSA 455
           +L+  +  +  SA Q++A    +   A   +K  + Q  +  + S AV  M  +   V++
Sbjct: 238 RLKTCLTRLQDSAEQLSALAGQSDQLASASSKGLDRQRVETEQVSAAVNQMAATTQEVAS 297

Query: 456 HAYESAKVAERSVAIANKGNEVVHNTINGMDNIREQIQDTAKRIKRLGESSQEIGDIVSL 515
           H   +A   +++  +  +G EV  +T   ++ +   + +T   + +L + S EIG +V +
Sbjct: 298 HVQRTADATQQANVLTGRGREVARDTREAIERLSAVVSETGVTVAQLAKDSNEIGSVVDV 357

Query: 516 IDDIADQTNILALNAAIQASLAGEAGRGFAVVADEVQRLAERSSSATRQIEALVRTIQAD 575
           I  IADQTN+LALNAAI+A+ AGE GRGFAVVADEV++LA+R+S +T QI  L+  +QA 
Sbjct: 358 IKGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAQRTSQSTTQIHGLITQLQAS 417

Query: 576 TNEAVISMEQTTAEVVRGARLAQDAGVALAEIEGVSQNLADLIHSISDAAQLQTSSAGQI 635
           +N AV SME    +   G     +A  AL  I     ++ D+   I+ A + Q++ A +I
Sbjct: 418 SNNAVQSMENGQRQAQEGVAWVLEADQALVGISEAVSHITDMTTQIAAATEEQSAVAEEI 477

Query: 636 SHTMAVIQQITAQTSAGSGATADSIRHLARMASEMRRSVSGF 677
           S  +  I ++  QTS  +  + D  + L   AS     V  F
Sbjct: 478 SRNITTIAELADQTSLQAHQSTDLSKELTNTASTQYALVERF 519



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 59/289 (20%), Positives = 112/289 (38%), Gaps = 34/289 (11%)

Query: 152 ATLAETVPQLQVEYEKVVEILLQSGAPANQVAVA-QRQLLLAERILGSVNTVLAGDDSAA 210
           A L   + +LQ   E++  +  QS   A+  +    RQ +  E++  +VN + A     A
Sbjct: 237 ARLKTCLTRLQDSAEQLSALAGQSDQLASASSKGLDRQRVETEQVSAAVNQMAATTQEVA 296

Query: 211 ----QAADAF---------GRDAGRFGQVLEGMINGNATIQVTRVEDADARARLAEIAEL 257
               + ADA          GR+  R     E +   +A +  T V  A       EI  +
Sbjct: 297 SHVQRTADATQQANVLTGRGREVAR--DTREAIERLSAVVSETGVTVAQLAKDSNEIGSV 354

Query: 258 FQFVAGSVDEI----LETSPELFRVREAAGNIFSLSQTLLDEASHLANGFENLAGGRTLD 313
              + G  D+     L  + E  R  E  G  F++   + DE   LA         ++  
Sbjct: 355 VDVIKGIADQTNLLALNAAIEAARAGEQ-GRGFAV---VADEVRQLAQ-----RTSQSTT 405

Query: 314 TVGGYVLGLLALASIILIGLVMVRTTNRQLRETAEKNERNQQAIMRLLDEIEELADGDLT 373
            + G +  L A ++  +  +       RQ +E         QA++ + + +  + D  +T
Sbjct: 406 QIHGLITQLQASSNNAVQSM---ENGQRQAQEGVAWVLEADQALVGISEAVSHITD--MT 460

Query: 374 VTVSVTEDFTGAIADSINYSVDQLRDLVATINHSAVQVAAAVQDTQNTA 422
             ++   +   A+A+ I+ ++  + +L    +  A Q     ++  NTA
Sbjct: 461 TQIAAATEEQSAVAEEISRNITTIAELADQTSLQAHQSTDLSKELTNTA 509