Pairwise Alignments

Query, 686 a.a., Protein PilJ from Pseudomonas putida KT2440

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  173 bits (439), Expect = 2e-47
 Identities = 112/386 (29%), Positives = 207/386 (53%), Gaps = 25/386 (6%)

Query: 305 NLAGGRTLDTVGGY-----VLGLLALASI-----ILIGLVMVRTTNRQLRETAEKNERNQ 354
           N+A  +T DT  G      + G++A++       +L+  ++ R+    LR+  E      
Sbjct: 170 NVADAKTADTDAGQSYDGAITGVIAVSVAAALLTVLLAWLLTRSIVTPLRKAVEV----- 224

Query: 355 QAIMRLLDEIEELADGDLTVTVSVT-EDFTGAIADSINYSVDQLRDLVATINHSAVQVAA 413
                     E +A G+L+  +    +D    +  ++      LR  +  I  SA Q+A+
Sbjct: 225 ---------AETIAGGNLSKAIEDDGKDEPARLLGALATMQANLRQTIQHIAGSATQLAS 275

Query: 414 AVQDTQNTARQLAKASEHQAAQISEASEAVGDMVESIDRVSAHAYESAKVAERSVAIANK 473
           A ++      + +K  + Q  +I +A+ AV +M  +++ V+ +A  +++ + +S   A +
Sbjct: 276 AAEELSAVTEEASKGLQQQNNEIDQAATAVNEMTAAVEEVARNAVSTSEASSQSNQAARE 335

Query: 474 GNEVVHNTINGMDNIREQIQDTAKRIKRLGESSQEIGDIVSLIDDIADQTNILALNAAIQ 533
           G + V  T+  +  + + +Q+TA  I+ L    ++IG ++ +I  IA+QTN+LALNAAI+
Sbjct: 336 GRDRVVETVGAIQTMTQDVQNTAAMIEGLATQGRDIGKVLDVIRAIAEQTNLLALNAAIE 395

Query: 534 ASLAGEAGRGFAVVADEVQRLAERSSSATRQIEALVRTIQADTNEAVISMEQTTAEVVRG 593
           A+ AGEAGRGFAVVADEV+ LA R++ +T++IE +V  IQ  T EAV SM+Q+       
Sbjct: 396 AARAGEAGRGFAVVADEVRALAHRTAQSTQEIEKMVAGIQNGTGEAVQSMQQSNQRTQTT 455

Query: 594 ARLAQDAGVALAEIEGVSQNLADLIHSISDAAQLQTSSAGQISHTMAVIQQITAQTSAGS 653
             +A+ AGVAL +I      + +    I+ A++ Q   + ++   +  I+ +  Q++AG+
Sbjct: 456 LEMARAAGVALEQITQSISLINERNLVIASASEEQAQVSREVDRNLVNIRDLATQSAAGA 515

Query: 654 GATADSIRHLARMASEMRRSVSGFTL 679
             T+ +   L+R+A ++   V+ F +
Sbjct: 516 NQTSAASHELSRLAVDLNGMVARFVI 541



 Score = 45.4 bits (106), Expect = 7e-09
 Identities = 81/393 (20%), Positives = 145/393 (36%), Gaps = 62/393 (15%)

Query: 175 SGAPANQVAVAQRQLLLAERILGSVNTVLAGDDSAAQAADAFGRDAGRFGQVLEGMINGN 234
           +G  A  VA A   +LLA  +  S+ T L     A + A+         G  L   I  +
Sbjct: 190 TGVIAVSVAAALLTVLLAWLLTRSIVTPLR---KAVEVAETIA------GGNLSKAIEDD 240

Query: 235 ATIQVTRVEDADARARLAEIAELFQFVAGSVDEILETSPELFRVREAAGNIFSLSQTLLD 294
              +  R+  A A  + A + +  Q +AGS  ++   + EL  V E A          +D
Sbjct: 241 GKDEPARLLGALATMQ-ANLRQTIQHIAGSATQLASAAEELSAVTEEASKGLQQQNNEID 299

Query: 295 EASHLANGFENLAGGRTLDTVGGYVLGLLALASIILIGLVMVRTTNRQLRETAEKNERNQ 354
           +A+   N                                  V    R    T+E + ++ 
Sbjct: 300 QAATAVNEM-----------------------------TAAVEEVARNAVSTSEASSQSN 330

Query: 355 QAIMRLLDEIEELADGDLTVTVSVTEDFTGAIADSINYSVDQLRDLVATINHSAVQVAAA 414
           QA     D + E      T+T  V    T A+ + +     Q RD+        + V  A
Sbjct: 331 QAAREGRDRVVETVGAIQTMTQDVQN--TAAMIEGL---ATQGRDI-----GKVLDVIRA 380

Query: 415 VQDTQNTARQLAKASEHQAAQISEASEAVGDMVESIDRVSAHAYESAKVAERSVAIANKG 474
           + +  N    LA  +  +AA+  EA      + + +  ++    +S +  E+ VA    G
Sbjct: 381 IAEQTNL---LALNAAIEAARAGEAGRGFAVVADEVRALAHRTAQSTQEIEKMVAGIQNG 437

Query: 475 NEVVHNTINGMDNIREQIQDTAKRIKRLGESSQEIGDIVSLIDDIADQTNILALNAAIQA 534
                  +  M    ++ Q T +  +  G + ++I   +SLI+   ++  ++A  +  QA
Sbjct: 438 ---TGEAVQSMQQSNQRTQTTLEMARAAGVALEQITQSISLIN---ERNLVIASASEEQA 491

Query: 535 SLAGEAGRGFAVVADEVQRLAERSSSATRQIEA 567
            ++ E  R    + D    LA +S++   Q  A
Sbjct: 492 QVSREVDRNLVNIRD----LATQSAAGANQTSA 520