Pairwise Alignments

Query, 686 a.a., Protein PilJ from Pseudomonas putida KT2440

Subject, 639 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  181 bits (459), Expect = 1e-49
 Identities = 111/357 (31%), Positives = 195/357 (54%), Gaps = 15/357 (4%)

Query: 322 LLALASIILIGLVMVRTTNRQLRETAEKNERNQQAIMRLLDEIEELADGDLTVTVSVTE- 380
           LLAL   +L  +++ R   R L++T              L  +E++A GDLT  + VT  
Sbjct: 295 LLALLVGVLAAVLITRQITRPLQDT--------------LVAVEKIASGDLTQHMRVTRR 340

Query: 381 DFTGAIADSINYSVDQLRDLVATINHSAVQVAAAVQDTQNTARQLAKASEHQAAQISEAS 440
           D  G +   I      LR+L++ I     Q+A+A ++      Q +  +  Q  +  + +
Sbjct: 341 DELGVLQQGIARMGTTLRELISGIRDGVTQIASAAEELSAVTEQTSAGANSQKVETDQVA 400

Query: 441 EAVGDMVESIDRVSAHAYESAKVAERSVAIANKGNEVVHNTINGMDNIREQIQDTAKRIK 500
            A+ +M  ++  V+ +A +++  A  +   A  G+ VV   I  ++ + E +  + + + 
Sbjct: 401 TAMHEMAATVQEVARNAEQASHAATGADDEARAGDRVVGEAIGQIERLAEDMHRSTEAMN 460

Query: 501 RLGESSQEIGDIVSLIDDIADQTNILALNAAIQASLAGEAGRGFAVVADEVQRLAERSSS 560
            L + SQ+IG ++ +I  +A+QTN+LALNAAI+A+ AGEAGRGFAVVADEV+ LA+R+  
Sbjct: 461 LLQQESQKIGSVMDVIKSVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQK 520

Query: 561 ATRQIEALVRTIQADTNEAVISMEQTTAEVVRGARLAQDAGVALAEIEGVSQNLADLIHS 620
           +T +IE L+ ++Q  T +   +M+ + A       LA+ AG +L  I     ++  +   
Sbjct: 521 STEEIEELIASLQHGTQQVANAMQGSRALTDSSVELARKAGSSLESITSTVSSIQSMNQQ 580

Query: 621 ISDAAQLQTSSAGQISHTMAVIQQITAQTSAGSGATADSIRHLARMASEMRRSVSGF 677
           I+ AA+ Q++ A +IS ++  ++ ++ QT+A S  TA S   LAR+  +++  VS F
Sbjct: 581 IAAAAEQQSAVAEEISRSILNVRDVSEQTAAASDETAASSVELARLGGQLQTLVSQF 637



 Score = 42.7 bits (99), Expect = 5e-08
 Identities = 94/466 (20%), Positives = 167/466 (35%), Gaps = 87/466 (18%)

Query: 281 AAGNIFSLSQTLLDEASHLANGFENLAGGRTL----DTVGGYVLGLLALASIILIGLVMV 336
           AA N  +       + ++LA  F++    + L    DT+  Y L L  +      G    
Sbjct: 75  AAANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKLSLNKMRQ----GYDAT 130

Query: 337 RTTNRQLRETAEKNERNQQAIMRLLDEIEELADGDLTVTVSVTEDFTGAIADSINYSVDQ 396
           R     +  +A    R  QA+  L  E+    + D +V ++  +  + A    +   +D 
Sbjct: 131 RAARVSMDSSAI---RADQAMDALSQEVMARPEAD-SVRLAQYQLISKARQQLLQVRID- 185

Query: 397 LRDLVA---TINHSAV--QVAAAVQDTQNTARQLAKASEHQAAQISEASEAVGDMVESI- 450
           +R  +A   + N  A   Q+ AA+ DT N  RQL  + + +  Q   A  A  D V    
Sbjct: 186 VRGYIAENSSANEQAALRQLDAALADTDNLKRQL-PSEDARLQQFENAVLAYRDAVRQFR 244

Query: 451 DRVSAHAYESAKVAERSVAIANKGNEVVHNTINGMD------------------------ 486
           D V+      A++  +   I  + + +    +   D                        
Sbjct: 245 DAVANITTSRAEMTVQGADIVKRSDALYQIQLERRDIESTQARSLQAIATLLALLVGVLA 304

Query: 487 ------NIREQIQDTAKRIKRLGESSQEIGDIVS-LIDDIADQTNILALNAAIQASLAGE 539
                  I   +QDT   ++++       GD+   +     D+  +L    A   +   E
Sbjct: 305 AVLITRQITRPLQDTLVAVEKIAS-----GDLTQHMRVTRRDELGVLQQGIARMGTTLRE 359

Query: 540 AGRGFAVVADEVQRLAERSSSATRQIEALVRTIQADTNEAVISMEQTTAEVVRGARLAQD 599
              G      ++   AE  S+ T Q  A   + + +T++   +M +  A V   AR A+ 
Sbjct: 360 LISGIRDGVTQIASAAEELSAVTEQTSAGANSQKVETDQVATAMHEMAATVQEVARNAEQ 419

Query: 600 AGVA--------------LAEIEGVSQNLADLIHSISDAAQLQTSSAGQISHTMAVIQQI 645
           A  A              + E  G  + LA+ +H  ++A  L    + +I   M VI+ +
Sbjct: 420 ASHAATGADDEARAGDRVVGEAIGQIERLAEDMHRSTEAMNLLQQESQKIGSVMDVIKSV 479

Query: 646 TAQTS---------------AGSG--ATADSIRHLARMASEMRRSV 674
             QT+               AG G    AD +R LA+   +    +
Sbjct: 480 AEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEI 525