Pairwise Alignments

Query, 239 a.a., 16S rRNA m3U1498 methyltransferase from Pseudomonas putida KT2440

Subject, 241 a.a., Ribosomal RNA small subunit methyltransferase E from Xanthobacter sp. DMC5

 Score =  107 bits (268), Expect = 2e-28
 Identities = 76/235 (32%), Positives = 120/235 (51%), Gaps = 17/235 (7%)

Query: 5   RFFIDAPLSLGEHDLPEAQA-HYIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTVRV 63
           R  + A L+ G   + E +A HY+  V+R+  G+ + LF+G   E+R   +  GK+ VR+
Sbjct: 10  RLHVAADLAEGAEIVLEREAAHYVANVIRLGVGEDILLFNGRDGEWRATRIAGGKREVRL 69

Query: 64  SLDQAFAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEV-RLKDER 122
            + +    Q  +P   +    L    R+D+ +QKA E+GA  ++P+++   +V R+  ER
Sbjct: 70  EVLRETRAQPPAPTLEYAFAPLKHA-RLDYMVQKAVEMGAGILSPVITRYTQVSRVNVER 128

Query: 123 ADKRLAHWRQVAISACEQCGRSTLPVIHPPVTLAEWLSSTKADLKLVLHPVA----EPL- 177
                      AI A EQCG  +LP +  P  L  WL+S   D  LV    A    +P+ 
Sbjct: 129 MTAN-------AIEAAEQCGILSLPHVEEPRPLDSWLASLAEDRLLVFCDEASADEDPIA 181

Query: 178 -ISHEKPATLAFVIGPEGGLSEAEVEQAKAAGFHAARLGPRVLRTETAPVVALSV 231
            +   +P  ++ +IGPEGG S  E  +    G     LGPR+LR +TA V AL++
Sbjct: 182 ALKQARPGPVSVLIGPEGGFSPEERTRIAPRGL-TLSLGPRILRADTAAVAALAL 235