Pairwise Alignments

Query, 239 a.a., 16S rRNA m3U1498 methyltransferase from Pseudomonas putida KT2440

Subject, 244 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Dickeya dianthicola ME23

 Score =  210 bits (534), Expect = 2e-59
 Identities = 111/242 (45%), Positives = 157/242 (64%), Gaps = 4/242 (1%)

Query: 1   MRLSRFFIDAPLSL--GEHDLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGK 58
           MR+ R F    L+   GE +L E  A+++ RVLRM+ G A+QLFD S Q +  ++L+VGK
Sbjct: 1   MRIPRIFHPDTLAPQGGETELSEDAANHVSRVLRMSAGQALQLFDDSNQVFDAEILQVGK 60

Query: 59  KTVRVSLDQAFAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEVRL 118
           K+VRV          +SPLH+HLGQ +SRGE+M++ IQK+ ELG N ITP++SERC ++L
Sbjct: 61  KSVRVRYAAGHTEDRESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGIKL 120

Query: 119 KDERADKRLAHWRQVAISACEQCGRSTLPVIHPPVTLAEWLSSTKADLKLVLHP-VAEPL 177
             ER +K++A W+++AI+ACEQCGR+ +P I P   L  W + +   LKL LHP  A+ +
Sbjct: 121 DGERLEKKIAQWQKIAIAACEQCGRNRVPEIRPVQALESWCAESDNGLKLNLHPRAAQSI 180

Query: 178 ISHEKPAT-LAFVIGPEGGLSEAEVEQAKAAGFHAARLGPRVLRTETAPVVALSVAQQLW 236
            +   P + +  +IGPEGGLS  E+      GF    LGPRVLRTET  + A++  Q  +
Sbjct: 181 NTLPLPVSRIRLLIGPEGGLSADEIAMTATRGFTDILLGPRVLRTETTALTAITALQVRF 240

Query: 237 GD 238
           GD
Sbjct: 241 GD 242