Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 442 a.a., DEAD/DEAH box helicase from Rhodanobacter sp000427505 FW510-R12

 Score =  431 bits (1109), Expect = e-125
 Identities = 232/440 (52%), Positives = 302/440 (68%), Gaps = 13/440 (2%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSF SLGL+ AL+RA+   GYTQPTP+Q  AIP  L+G DL+ AAQTGTGKT  FALP+L
Sbjct: 1   MSFDSLGLAPALLRALADYGYTQPTPIQAAAIPPALEGHDLLAAAQTGTGKTAAFALPLL 60

Query: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120
           ++L  +G          R+PR L+LTPTRELAAQ+H++ + Y + + + +A IFGGVGM 
Sbjct: 61  QKLSTSGQTMT------RRPRALILTPTRELAAQIHENMRDYGKHIHVSAATIFGGVGMG 114

Query: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
           PQI A+ +GVDV++A PGRL+D   Q  +DL+ VE LVLDEADRMLDMGF+  +K++L  
Sbjct: 115 PQINALRRGVDVVIATPGRLIDHLQQRTLDLSAVETLVLDEADRMLDMGFLPALKRILQS 174

Query: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240
           +P KRQ LLFSATF+  I  LA   +HNP  I V+ PNT    +  +V+ + AS KR LL
Sbjct: 175 VPKKRQTLLFSATFAPAIKALALDFMHNPREISVSAPNTVTTLVSHQVHPVDASRKRDLL 234

Query: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300
            H+++  +  Q LVF+RTKHGA++L  +L   GL AAAIHGNKSQNART+ALADFK+  V
Sbjct: 235 LHVLSQDSRRQTLVFSRTKHGADKLVTFLNASGLRAAAIHGNKSQNARTRALADFKSGRV 294

Query: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
            VLVATDIAARG+DI+QLP V+NF+LP+V EDYVHRIGRTGRAG  G A+SLV+ DE  L
Sbjct: 295 TVLVATDIAARGIDIEQLPIVINFDLPSVAEDYVHRIGRTGRAGMEGLALSLVSHDESGL 354

Query: 361 LKSIERVTKQRIADGDLMGFDAS---QVEAEKPEARERPQNNGRGGRNQQARGEGGKDTN 417
           L  I ++ KQ IA   + G++ S   +++A  P    RP+  G G R QQ     GK   
Sbjct: 355 LFDIRKLLKQDIAITPVAGYEPSAPLRLDAGAP----RPKQGGGGQRQQQRAPRQGKPAG 410

Query: 418 GGRKDKGKDKGKARQQAAAK 437
             R +    +G+  + A  +
Sbjct: 411 AARPNGYAPQGRGERAAGTQ 430



 Score = 26.2 bits (56), Expect = 0.003
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 489 GNRADYVSPYQGKNQGRNRRPGGAGQGQGQGNGQRSNAGGQGQARNGGQP 538
           G R    +P QGK  G  R  G A QG+G+       A G  + R+  +P
Sbjct: 395 GQRQQQRAPRQGKPAGAARPNGYAPQGRGE------RAAGTQRRRSNRRP 438