Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 570 a.a., ATP-dependent RNA helicase RhlE from Xanthobacter sp. DMC5

 Score =  405 bits (1040), Expect = e-117
 Identities = 246/566 (43%), Positives = 331/566 (58%), Gaps = 34/566 (6%)

Query: 2   SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
           SF+SLGL+E +VRA+  A +  PTP+Q  AIP VL GRDL+  AQTGTGKT  FALPIL+
Sbjct: 27  SFSSLGLAEPIVRALTEANHVTPTPIQAEAIPQVLAGRDLIGIAQTGTGKTAAFALPILD 86

Query: 62  RLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNP 121
           RL    HP   +R  P+  R LVL+PTREL+ Q+ D+F+ + R   +      GGV M  
Sbjct: 87  RL--VRHP---RRPDPKSVRALVLSPTRELSGQIVDNFEKFGRHARISVTLAIGGVPMGR 141

Query: 122 QIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARL 181
           QI+A+A+GVDVLVA PGRL+DL     V L  VE+LVLDEAD+MLDMGF+H ++ ++ RL
Sbjct: 142 QIRALARGVDVLVATPGRLMDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRL 201

Query: 182 PAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLA 241
           P KR +L FSAT    I +LA  +LH+P R+ VTP   T +R+EQRV  +   +K  LLA
Sbjct: 202 PHKRHSLFFSATMPPAIAELAGGMLHDPVRVAVTPVAKTADRVEQRVIHVDKPNKGQLLA 261

Query: 242 HLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSVR 301
            +++    ++ LVF RTKHGA+++   L K G+ A AIHGNKSQN R + L  F+   +R
Sbjct: 262 EVLSTEEIDRALVFARTKHGADKVVRVLAKCGIAAEAIHGNKSQNQRDRVLLAFREGKIR 321

Query: 302 VLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLL 361
            L+ATDIAARG+D+  + HV+N++LPNV E YVHRIGRT RAGR G AIS    +E   L
Sbjct: 322 TLIATDIAARGIDVTGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAYL 381

Query: 362 KSIERVTKQRIADGDLMGF-------DASQVE-AEKPEARERPQ-NNGRGGRNQQARGEG 412
           KSIER+ K +I   D  G        DA  +E  E+ E  ER     GRGGR     G+ 
Sbjct: 382 KSIERLIKLQIPATDRRGAGMRFAIPDAPPIELEERDETAERNDFIGGRGGR----PGQR 437

Query: 413 GKDTNGGRKDKGKDKGKARQQAAAKPDDKEKSGDKQQPRKPRDKKSRPQQASNNSVPKPP 472
           G   + G + +G++ G+ + Q A   + +E  G++         + RP +A+     +P 
Sbjct: 438 GPQRSRGPRPEGREGGRGQGQRAEGREQREPRGERPA------GEGRPARAA-----QPR 486

Query: 473 ADRDPEEFLDDELDNFGNRADYVSPYQGKNQGRNRRPGGAGQGQGQGNGQRSNAGGQGQA 532
            +R PE   + +    GN A          +GR  RP G G+G G+  G R    G    
Sbjct: 487 PERAPEGHRNAQ--GAGNGAGRRDGQNRSGEGRGARPQGEGRG-GERGGDRGARPGNDLG 543

Query: 533 RNGGQPRSGGGEKRPPRANNGGGARR 558
             G         +RP  A    GA+R
Sbjct: 544 GLGFMKAVSNRSERP--AGRPAGAKR 567



 Score = 27.3 bits (59), Expect = 0.002
 Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 26/92 (28%)

Query: 505 RNRRPGGAGQGQGQGNGQRSNAGGQGQARNGGQPRSGGGEKRPPRANNGGGARRDG---- 560
           RN   GG G   GQ   QRS  G + + R GG+               G G R +G    
Sbjct: 423 RNDFIGGRGGRPGQRGPQRSR-GPRPEGREGGR---------------GQGQRAEGREQR 466

Query: 561 ------GGGRGRPARDDAARQEPAVRNPRQPE 586
                   G GRPAR    R E A    R  +
Sbjct: 467 EPRGERPAGEGRPARAAQPRPERAPEGHRNAQ 498