Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 532 a.a., ATP-dependent RNA helicase RhlE from Xanthobacter sp. DMC5

 Score =  311 bits (796), Expect = 6e-89
 Identities = 189/512 (36%), Positives = 291/512 (56%), Gaps = 24/512 (4%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSF+ LGLS+ ++ A+   GYT PTP+Q +AIP VL  RD++  AQTGTGKT  F LP+L
Sbjct: 1   MSFSELGLSDKVLAAVADTGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 60

Query: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120
             L       +  R   R PR L+L PTRELAAQV ++F  Y +   L  A + GGV   
Sbjct: 61  TLL-------EQGRARARMPRTLILEPTRELAAQVEENFTRYGKYSKLNVALLIGGVSFG 113

Query: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
            Q   + +GVDVL+A PGRLLD   +G++ L+ +E+LV+DEADRMLDMGFI D++++   
Sbjct: 114 DQDTKLVRGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKL 173

Query: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPAS--HKRA 238
           +P  RQ L FSAT   +I  L  + L +P R+EV+ P +T   + Q +         KR 
Sbjct: 174 VPFTRQTLFFSATMPPEIQRLVSQFLSSPVRVEVSKPASTATTVTQELVASGREDYEKRE 233

Query: 239 LLAHLI-TLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKA 297
           +L  LI +    +  ++F   K     L   L+K G  A A+HG+  Q+AR KAL +F+ 
Sbjct: 234 VLRELIRSCENLQNGIIFCNRKRDVAVLHRSLQKHGFNAVALHGDMDQHARIKALDEFRN 293

Query: 298 NSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357
               +LVA+D+AARGLDI  + HV N+++P+  EDYVHRIGRTGRAGR+G A ++V   +
Sbjct: 294 GEATLLVASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRAGTAYTMVTHLD 353

Query: 358 EKLLKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGEGGKDTN 417
            K L +IE++       G+ + +  + +    P +  R +++GR  R ++   +  ++  
Sbjct: 354 AKSLSAIEKLI------GNPIPWHGAPLGDAPPASERRGRDDGR-LRGKRRMDKEPREGR 406

Query: 418 GGRKDKGKDKGKARQQAAAKPDDKEKSGDKQQPRKPRDKKSRPQQASNNSVPKPPADRDP 477
           G R+ +G+ + +  ++  A+  ++   G++ + +   ++  RP++A      + P   + 
Sbjct: 407 GDREGRGEREPRREREPRAEGAER---GERPERQPRAERAERPERADRPERTERPERTER 463

Query: 478 EEFLDDELDNFGNRADYVSPYQGKNQGRNRRP 509
            E  + E      R    +  +G    RNRRP
Sbjct: 464 PERQERERAARPER----TAERGDRPERNRRP 491



 Score = 33.9 bits (76), Expect = 2e-05
 Identities = 37/144 (25%), Positives = 53/144 (36%), Gaps = 16/144 (11%)

Query: 496 SPYQGKNQGRNRRPGGAGQGQGQGNGQRSNAGGQGQARNGGQPRSGGGEK--RPPRANNG 553
           S  +G++ GR R      +   +G G R   G + + R   +PR+ G E+  RP R    
Sbjct: 382 SERRGRDDGRLRGKRRMDKEPREGRGDREGRG-EREPRREREPRAEGAERGERPERQPRA 440

Query: 554 GGARRDGGGGRG-------------RPARDDAARQEPAVRNPRQPEKQPVIIRKESKLDR 600
             A R     R              R  R+ AAR E       +PE+     R+E+   R
Sbjct: 441 ERAERPERADRPERTERPERTERPERQERERAARPERTAERGDRPERNRRPAREEAAEAR 500

Query: 601 FPTPEQLDDLPSRPRGERPALLTR 624
            P  E+            PA L R
Sbjct: 501 PPRRERAPANEPADMSHLPAFLLR 524



 Score = 32.7 bits (73), Expect = 4e-05
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 5/113 (4%)

Query: 512 AGQGQGQGNGQ-RSNAGGQGQARNGGQPRSGGGEKRPPRAN--NGGGARRDGGGGRGRPA 568
           A + +G+ +G+ R       + R G   R G GE+ P R       GA R G     +P 
Sbjct: 381 ASERRGRDDGRLRGKRRMDKEPREGRGDREGRGEREPRREREPRAEGAER-GERPERQPR 439

Query: 569 RDDAARQEPAVRNPRQPEKQPVIIRKESKLDRFPTPEQLDDLPSRP-RGERPA 620
            + A R E A R  R    +     +  + +R   PE+  +   RP R  RPA
Sbjct: 440 AERAERPERADRPERTERPERTERPERQERERAARPERTAERGDRPERNRRPA 492