Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 626 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  904 bits (2335), Expect = 0.0
 Identities = 486/640 (75%), Positives = 519/640 (81%), Gaps = 32/640 (5%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSFASLGLSEALVRAIEAAGYT+PTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120
           ERLFP GHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFK+YARDL  VSACIFGGVGMN
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120

Query: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
           PQ+QA+++GVDVLVACPGRLLDL GQG VDL+HVEILVLDEADRMLDMGF+HDVKKVLAR
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240
           LPAKRQNLLFSATFS+DIT LA KLLHNPERIEVTPPNTTVERIEQRV+RL ASHKRALL
Sbjct: 181 LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL 240

Query: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300
           AHLIT GAWEQVLVFTRTKHGANRLAEYL+K GLTA AIHGNKSQNARTKALADFKA SV
Sbjct: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV 300

Query: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVATDIAARGLDIDQLPHVVNFELPNV+EDYVHRIGRTGRAGRSGEAISLVAPDEEKL
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQ-NNGRGGRNQQARGEGGKDTNGG 419
           LKSIER+TKQ+IADGDLMGFDAS VEAEKPEARERP   N R  R  +  G  G    GG
Sbjct: 361 LKSIERMTKQKIADGDLMGFDASAVEAEKPEARERPDVRNPRNPRGPKGDGPNGGGGGGG 420

Query: 420 RKDKGKDKGKARQQAAAKPDDKEKSGDKQQP---RKPRDKKSRPQQASNNSVPKPPADRD 476
           R+DKGKDKGK          +K  SG  ++P   +KPR+     +Q   +  P+  ADR 
Sbjct: 421 RRDKGKDKGK----------EKSASGRGERPAREQKPREGTPAREQRQPSQPPRAAADRA 470

Query: 477 PEEFLDDELDNFGNRADYVSPYQGKNQGRNRRPGGAGQGQGQGNGQRSNAGG--QGQARN 534
           P+EFLDD++DNFGNR DYV P     QGR RRPG   QG G G    +  GG  QG  +N
Sbjct: 471 PDEFLDDDVDNFGNRVDYV-PQAKPAQGRGRRPGAPAQGAGAG----APRGGQPQGGRQN 525

Query: 535 GGQPRSGGGEKRPPRANNG--GGARRDGGGGR-------GRPARDDAAR-QEPAVRNPRQ 584
           G +  SGG    PP   NG   GA RDG   R        RPARDD  R  EPAV+NPR 
Sbjct: 526 GPRNSSGGTTGTPPAKRNGPRNGAPRDGQARREDSRSNNRRPARDDQQRSSEPAVQNPR- 584

Query: 585 PEKQPVIIRKESKLDRFPTPEQLDDLPSRPRGERPALLTR 624
               P II KESK DRFPTPEQLD LP RPRGE+PALLTR
Sbjct: 585 GGPAPKIIHKESKADRFPTPEQLDQLPGRPRGEKPALLTR 624