Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 444 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  390 bits (1003), Expect = e-113
 Identities = 209/413 (50%), Positives = 277/413 (67%), Gaps = 14/413 (3%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M+FA+LGL E L+RA+E  GY  PTPVQ +AIPAVL GRDLM AAQTGTGKT GFA+P+L
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60

Query: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120
           + L   G      +      R L+L PTRELA QVH S   YA++LPL +  ++GGV +N
Sbjct: 61  QLLTMEG-----PKVAANSARALILCPTRELAEQVHASVAEYAQNLPLTTYAVYGGVSIN 115

Query: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
           PQ+  + KGVD+LVA PGRL+DL  Q  + L  ++ LVLDEADRMLD+GF  ++  +   
Sbjct: 116 PQMMKLRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRM 175

Query: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240
           LP KRQ LLFSATFS DI  LA ++L++P  IEV+P N     ++Q V  +    K  L 
Sbjct: 176 LPKKRQTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELF 235

Query: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300
            HL+  G W+QVLVF +T++G + L + L+  G+ A  IHG+K Q  R +AL  FK++ V
Sbjct: 236 VHLMRKGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEV 295

Query: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           ++LVATD+AARGLDI+ LP VVNF+LP V EDY+HRIGRTGRAG +GEAISLV  DE  +
Sbjct: 296 QILVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNM 355

Query: 361 LKSIERVTKQRIADGDLMGF---------DASQVEAEKPEARERPQNNGRGGR 404
           L +IE +T+Q +       F         DAS    +KP+  ++P+++G GG+
Sbjct: 356 LSAIEMLTRQTLTRHMEQDFEPEHRVPDTDASGQVVKKPKKPKKPKSSGGGGK 408