Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 601 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

 Score =  491 bits (1263), Expect = e-143
 Identities = 290/604 (48%), Positives = 359/604 (59%), Gaps = 47/604 (7%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M+F  L L+ A+++A+   GY  PTP+Q +AIPAVL G DL+  AQTGTGKT  F LP+L
Sbjct: 1   MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFTLPML 60

Query: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120
            +L  +     + + G    R LVLTPTRELAAQV +S + Y + L L S  IFGGVGMN
Sbjct: 61  HKLSMSR--SATNKFGGTGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMN 118

Query: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
           PQI  + KGVD+LVA PGRLLDL  QG +DL+ V++L+LDEADRMLDMGFIHDVKK+LA 
Sbjct: 119 PQISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILAL 178

Query: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240
           +P ++Q+LLFSATFS DI DLA  LL NP+ I+VTP NTTV+RI Q ++ +    K+ALL
Sbjct: 179 VPKEKQSLLFSATFSDDIRDLASTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALL 238

Query: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300
           AH+I    W QVLVFTRTK GAN +AE+L K G+ A A+HGNKSQ+ART+ALA FK+  +
Sbjct: 239 AHIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDI 298

Query: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R LVATDIAARG+DID+LPHVVN+E+PNV EDYVHRIGRTGRAG SGEA+S V  DEE  
Sbjct: 299 RALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEGF 358

Query: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGR---------------- 404
           ++ IER TKQ I    + GF   + E  +P A  R    G  GR                
Sbjct: 359 MQEIERFTKQTIPVQIVEGFGPEEGERAEPIAMGRQTIWGGAGRPPSRDVMQAAAKAART 418

Query: 405 ------NQQARGEGGKDTNGGRKDKGKDKGKARQQAAAKPDDKEKSGDKQQPRKPRDKKS 458
                  +   G+GG +  GG    G+ +G  +     +  +    G  Q PR P    +
Sbjct: 419 EMLQRIRENKAGQGGGNGGGGGNGGGQRRGGGQGGGQGRGANGGGQGQGQGPRGPGGGGA 478

Query: 459 RPQQASNNSVPKPPADRDPEEFLDDELDNFGNR--ADYVSPYQGKNQGRNRRP---GGAG 513
           R  Q      P       P +      D    R   +  SP Q       R     GGAG
Sbjct: 479 RAPQGRGPQGPARAPHHAPHQQAHQPHDERQPRHHGNSHSPTQANQVAHLRAEAVGGGAG 538

Query: 514 Q-----------GQGQGNGQRSNAGG--QGQARNGGQPRSGGGEKRPPRANNGGGARRDG 560
           Q           G G+G G+    GG   G  R+GG  RSGGG         GGG R  G
Sbjct: 539 QPDPLRTSVDHMGGGRGRGRPGGGGGGYGGGNRSGGGGRSGGG-----GGYGGGGGRSGG 593

Query: 561 GGGR 564
           GGGR
Sbjct: 594 GGGR 597



 Score = 43.9 bits (102), Expect = 2e-08
 Identities = 33/82 (40%), Positives = 37/82 (45%), Gaps = 8/82 (9%)

Query: 515 GQGQGN-GQRSNAGGQ--GQARNGGQPR----SGGGEKRPPRANNGGGARRDGGGGRGRP 567
           GQG GN G   N GGQ  G  + GGQ R     G G+ + PR   GGGAR   G G   P
Sbjct: 430 GQGGGNGGGGGNGGGQRRGGGQGGGQGRGANGGGQGQGQGPRGPGGGGARAPQGRGPQGP 489

Query: 568 ARDDAARQEPAVRNPRQPEKQP 589
           AR            P   E+QP
Sbjct: 490 ARAPHHAPHQQAHQPHD-ERQP 510