Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 479 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Sphingobium sp. HT1-2

 Score =  372 bits (954), Expect = e-107
 Identities = 208/434 (47%), Positives = 282/434 (64%), Gaps = 10/434 (2%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M F  LGLSE +++A+ A  Y +PTP+QQ+AIP +L+GRDL   AQTGTGKT  FALP L
Sbjct: 1   MHFNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSL 60

Query: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120
           +  + A +P  +   G R   +LVL+PTRELAAQ+  SF+ Y R L L    +FGGV +N
Sbjct: 61  D--YFARNPKPTPIKGCR---MLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVN 115

Query: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
            QI+A++ GVD++VA PGRLLDL  Q    +   EI VLDEAD+M+DMGFIH +K++   
Sbjct: 116 KQIRALSAGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKL 175

Query: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240
           LP  RQNL FSAT  K+I  LA + L++P ++ V P +TT ER+ Q++  +  + K+ALL
Sbjct: 176 LPRDRQNLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAEKQALL 235

Query: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300
             ++     ++ L+FTRTKHGA+R+  +LE  G+ A AIHGNKSQ  RT AL  F+    
Sbjct: 236 HIVLKTEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHC 295

Query: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           ++LVATDIAARG+D+  + HV+NFE+PNV E YVHRIGRT RAG  G AIS VA DE   
Sbjct: 296 KLLVATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPY 355

Query: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNG--RGGRNQQARGEGGKDTNG 418
           LK+IER TK +    +++    + +EA +   +  PQ  G  +    Q  R EG +    
Sbjct: 356 LKAIERATKVK---PEIVPLPENFLEAVRNLPKPAPQRRGPSQSPAQQAKRAEGQRRYQE 412

Query: 419 GRKDKGKDKGKARQ 432
           G+K +     KAR+
Sbjct: 413 GQKAQRGAPDKARR 426