Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 463 a.a., ATP-dependent RNA helicase Atu1833 from Sphingobium sp. HT1-2

 Score =  323 bits (827), Expect = 1e-92
 Identities = 185/449 (41%), Positives = 265/449 (59%), Gaps = 10/449 (2%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M+FA LGLS+ L++A+  AGY  PTP+Q +AIP VL  +D++  AQTGTGKT  F LP++
Sbjct: 1   MTFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI 60

Query: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120
           + L          R     PR L+L PTRELAAQV ++F+ Y +   L  A + GGV M 
Sbjct: 61  DILAHG-------RARALMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMG 113

Query: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
            QI+A+ KGVDVL+A PGRL+DL  +GK+ L    +LV+DEADRMLDMGFI D++++  +
Sbjct: 114 DQIKALEKGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTK 173

Query: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240
           LPA+RQ LLFSAT    I  LAD+ L NP+ IEV  P T    I QR+ ++ +  KR  L
Sbjct: 174 LPAQRQTLLFSATMPPVIKKLADRFLDNPKSIEVARPATASTNITQRLVKVDSRKKREAL 233

Query: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300
             ++     +  ++F   K     L + L++ G  +  IHG+  Q +R   L  F+  SV
Sbjct: 234 RAMLEAEDVQSAVIFCNRKTTVRELNKSLQRHGFKSGEIHGDIDQASRIAELERFRDGSV 293

Query: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
            +LVA+D+AARGLDI  + HV NF+ P   +DYVHRIGRTGRAG  G A + VA ++ + 
Sbjct: 294 NILVASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVAAEDAEA 353

Query: 361 LKSIERV--TKQRIADGDLMGFDASQVEAEKPEA-RERPQNNGRGGRNQQARGEGGKDTN 417
           + +I+++  TK    +  +    A + + E  +A RE   N   GGR  + + E   D  
Sbjct: 354 IDNIQKLIGTKIDYVETPVAAAPAPRAKEEPRKADREERDNERSGGREARRKPERKDDRR 413

Query: 418 GGRKDKGKDKGKARQQAAAKPDDKEKSGD 446
             ++D  +D  +    A + P  + +  D
Sbjct: 414 SDKRDDRRDDRRDAPAARSAPHSRRQEPD 442