Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 455 a.a., ATP-dependent RNA helicase RhlE from Escherichia coli ECRC101

 Score =  484 bits (1247), Expect = e-141
 Identities = 261/463 (56%), Positives = 328/463 (70%), Gaps = 23/463 (4%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSF SLGLS  ++RA+   GY +PTP+QQ+AIPAVL+GRDLM +AQTGTGKT GF LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120
           + L       +    G R  R L+LTPTRELAAQ+ ++ + Y++ L + S  +FGGV +N
Sbjct: 61  QHLITR----QPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSIN 116

Query: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
           PQ+  +  GVDVLVA PGRLLDL  Q  V L  VEILVLDEADRMLDMGFIHD+++VL +
Sbjct: 117 PQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTK 176

Query: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240
           LPAKRQNLLFSATFS DI  LA+KLLHNP  IEV   NT  +++ Q V+ +    KR LL
Sbjct: 177 LPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELL 236

Query: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300
           +H+I  G W+QVLVFTRTKHGAN LAE L K G+ +AAIHGNKSQ ART+ALADFK+  +
Sbjct: 237 SHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           RVLVATDIAARGLDI++LPHVVN+ELPNV EDYVHRIGRTGRA  +GEA+SLV  DE KL
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGEGGKDTNGGR 420
           L+ IE++ K+ I    + G++        P  +  P  NGR  R    RG+GG    GGR
Sbjct: 357 LRDIEKLLKKEIPRIAIPGYEPD------PSIKAEPIQNGRQQRGGGGRGQGG----GGR 406

Query: 421 KDKGKDKGK-ARQQAAAKPDDK--------EKSGDKQQPRKPR 454
             +   +G+   + A+AKP +K        + +G++Q+ R+PR
Sbjct: 407 GQQQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPR 449



 Score = 28.5 bits (62), Expect = 7e-04
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 15/58 (25%)

Query: 533 RNGGQPRSGGGEKRPPRANNGGGARRDGGGGRG--RPARDDAARQEPAVRNPRQPEKQ 588
           +NG Q R             GGG R  GGGGRG  +P R +   +  + +   +P ++
Sbjct: 388 QNGRQQR-------------GGGGRGQGGGGRGQQQPRRGEGGAKSASAKPAEKPSRR 432