Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 453 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  310 bits (793), Expect = 1e-88
 Identities = 176/461 (38%), Positives = 263/461 (57%), Gaps = 28/461 (6%)

Query: 2   SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
           SF +  L++ L+ A++ AGYT+PTP+Q++ IP  L G+D++  AQTGTGKT  + LP+L 
Sbjct: 7   SFENFKLNKQLLEAVKEAGYTKPTPIQEKTIPLALAGQDILGIAQTGTGKTAAYVLPLLM 66

Query: 62  RLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNP 121
                    K++       R L+L PTREL  Q+  +     +   L  AC++GGVG  P
Sbjct: 67  ---------KTKYAQGEHARALILAPTRELVIQIEQAILTLGKYTDLRYACLYGGVGPTP 117

Query: 122 QIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARL 181
           QI+ I  GVD+++A PGR +D+  +G++ + +++ +V+DEAD+M+DMGF+  ++ +L  +
Sbjct: 118 QIEKIRAGVDIIIATPGRFMDIYSKGELFVRNIKTMVMDEADKMMDMGFMPQIRSILEVI 177

Query: 182 PAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLP-ASHKRALL 240
           P KRQN+LFSATFS+ +  ++ + L  PERIE+    TT + + Q  Y +P    K  LL
Sbjct: 178 PVKRQNMLFSATFSERVERISHEFLEFPERIEIALQATTADTVAQTKYFVPNLKTKITLL 237

Query: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLE--KQGLTAAAIHGNKSQNARTKALADFKAN 298
            HL+      +V+VFT+++  A  + +YLE  K G     IH NK QN R  ++ DFK+ 
Sbjct: 238 DHLLQNEEINRVIVFTKSRKNAEAVYQYLERRKHG-EIRVIHANKGQNTRINSVDDFKSG 296

Query: 299 SVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEE 358
            VR+LVATD+AARGLDI  + HVVNF++P + EDYVHR+GRTGRA + G A + V P EE
Sbjct: 297 DVRILVATDVAARGLDISMVSHVVNFDVPLIYEDYVHRVGRTGRAEQEGAAFTFVNPAEE 356

Query: 359 KLLKSIERVTKQ-----------RIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQ 407
                IE + +            RIAD       A   E +K   +  P   G     ++
Sbjct: 357 YHFGRIEEIIRMEVPEEPIPKEVRIADTPFAEKQAYDREIDKQRQKADPTFKG-AFHEKK 415

Query: 408 ARGEGGKDTNGGRKDKGKDKGKARQQAAAKPDDKEKSGDKQ 448
            R       N    +K K +G    +A    +  +K G K+
Sbjct: 416 VRANTNPHYN---PEKKKVRGNKNSKAKRNRNQMKKKGGKR 453