Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 416 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  367 bits (942), Expect = e-106
 Identities = 192/420 (45%), Positives = 281/420 (66%), Gaps = 9/420 (2%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M F  L +   +++A+E  GY +PT +Q +AIP +L+GRD++  AQTGTGKT  FA+PI+
Sbjct: 1   MKFKDLRIIPPILKALEDKGYDEPTSIQAQAIPHILEGRDVLGCAQTGTGKTAAFAIPII 60

Query: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120
           + +  A + ++       + R L++TPTRELA Q+ ++   YA++  +    IFGGV   
Sbjct: 61  QHIHEAPYANEPWA----KIRSLIVTPTRELAIQIGENIDEYAKNTNVSHTVIFGGVKQG 116

Query: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
            Q+  + KGV +LVA PGRLLDL  QG + L  +++ VLDEADRMLDMGFI+D+KK+L  
Sbjct: 117 AQVAQLKKGVHILVATPGRLLDLIDQGHISLKAIDLFVLDEADRMLDMGFINDIKKLLKI 176

Query: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240
           LP KRQ+L FSAT   +I  L+ ++L NP+++EVTP ++T E I+Q +Y    S K++LL
Sbjct: 177 LPKKRQSLFFSATMPDNILQLSKEILDNPQKVEVTPVSSTAETIQQYIYYTNKSSKKSLL 236

Query: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300
            H++     +QVL+F+RTKHGA+R+   L+K+ + AAAIHG+K+QN R + L+DFK N +
Sbjct: 237 IHILEKEGMDQVLLFSRTKHGADRIVRDLKKKHIKAAAIHGDKAQNQRQRVLSDFKDNKL 296

Query: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           RVLVATDIAARG+DID+L +V+NF++P+  E Y+HRIGR+GRAG  G AISL  P+E   
Sbjct: 297 RVLVATDIAARGIDIDKLKYVINFDIPDTPETYIHRIGRSGRAGEEGTAISLCEPEENAD 356

Query: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKP-EARERPQNNGRGGRNQQARGEGGKDTNGG 419
           +K+IE++  + I     +  D    + +KP  A+E+ + N    R +Q      K   GG
Sbjct: 357 VKAIEKLANKNIT----VISDHPFPQTDKPMTAQEKKEFNKEKQRRKQEFFANRKKNRGG 412