Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 491 a.a., DEAD/DEAH box helicase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  406 bits (1044), Expect = e-117
 Identities = 238/519 (45%), Positives = 324/519 (62%), Gaps = 40/519 (7%)

Query: 6   LGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFP 65
           +GL++AL++A+ + GYT+PTP+Q++AIP V+ G+DL+  AQTGTGKT  FALPIL RL  
Sbjct: 1   MGLNKALLQALASTGYTKPTPIQEKAIPDVMAGKDLLGIAQTGTGKTAAFALPILHRLAE 60

Query: 66  AGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNPQIQA 125
                K     PR  RVLVL+PTRELA Q+ DSFK Y   L    A IFGGV    Q +A
Sbjct: 61  NRIAPK-----PRTTRVLVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGGVKYGGQERA 115

Query: 126 IAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKR 185
           + +G+D+LVA PGRLLD   Q  +DL+  EI VLDEAD+MLD+GFI  +++++A++PAKR
Sbjct: 116 LQQGLDILVAAPGRLLDHIQQKNLDLSSTEIFVLDEADQMLDLGFIKPIRQIVAKIPAKR 175

Query: 186 QNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLIT 245
           QNL FSAT   +I  LA +LL +P +++VTP +TTV+RI Q V  +    KRALL  + +
Sbjct: 176 QNLFFSATMPSEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVYIEQGRKRALLTEMFS 235

Query: 246 LGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSVRVLVA 305
              + + LVFT+TKHGA+++A YLE  G+ A AIHGNKSQ  R + L  FK   +RVLVA
Sbjct: 236 DPEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLEAFKKGKLRVLVA 295

Query: 306 TDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIE 365
           TDIAARG+D+D + HVVNFELP+V E YVHRIGRT RAG+ G A+S VA DE KLL+ IE
Sbjct: 296 TDIAARGIDVDGVSHVVNFELPHVPESYVHRIGRTARAGKDGTAVSFVAGDEMKLLRDIE 355

Query: 366 RVTKQRIA------DGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGEGGKDTNGG 419
           +VT+Q+I       D  L   DA+ +     +    P+  G G RN+  +G GG+    G
Sbjct: 356 KVTRQKIPAIDRRNDKALGQLDATIMATGVGKKATMPEREG-GERNEGGQGRGGR----G 410

Query: 420 RKDKGKDKGKARQQAAAKPDDKEKSGDKQQPRKPRDKKSRPQQASNNSVPKPPADRDPEE 479
           R+   ++    R +   +P  + ++   + P  P     RP++A N        +R P  
Sbjct: 411 RRAPHRE--GVRPEGGGQPHRQRRNRPGETPAAP-----RPERAYNPLA----GERVP-- 457

Query: 480 FLDDELDNFGNRADYVSPYQGKNQGR-NRRPGGAGQGQG 517
                     +  D V P +G+ + R  RRP   G+G G
Sbjct: 458 ----------SINDNVKPAEGEMKRRPRRRPSNGGKGYG 486