Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 502 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score =  362 bits (929), Expect = e-104
 Identities = 211/477 (44%), Positives = 278/477 (58%), Gaps = 27/477 (5%)

Query: 2   SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
           SF  LGLSE +V ++   GYT PTP+Q +AIP +L+GRDL+  AQTGTGKT  F LPI+E
Sbjct: 15  SFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 74

Query: 62  RLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNP 121
            L       ++ R   R  R L+L PTREL  Q+ D+ + + +  PL    + GG  +N 
Sbjct: 75  MLMK-----QADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINK 129

Query: 122 QIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARL 181
           Q   + KG D+LVA PGRLLDL  +  + L+ V  LVLDEAD+MLD+GFIHD++K+   +
Sbjct: 130 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMV 189

Query: 182 PAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASH-KRALL 240
           P KRQ LLFSAT  K I++LA   L +P ++EVTPP    +++EQ V+ +   + K  LL
Sbjct: 190 PPKRQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLL 249

Query: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300
              +      + +VF RTKHGA +L ++LE  G   A+IHGNKSQ  R +AL  FK   +
Sbjct: 250 KKSLNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEI 309

Query: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           +VLVATD+AARG+DI  + HV N++LP V + YVHRIGRT RAGR G AI+  APDE +L
Sbjct: 310 KVLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRL 369

Query: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERP--QNNGRGGRNQ---QARG--EGG 413
           L  IE+          LM  D      E+P     P   NN RGGRN    Q RG  EGG
Sbjct: 370 LHDIEK----------LMKIDIPVASGERPAGLASPTRPNNNRGGRNNNGGQPRGPREGG 419

Query: 414 KDTNGGRKDKGKDKGKARQQAAAKPD---DKEKSGDKQQPRKPRDKKSRPQQASNNS 467
           +     R  +      A        D    K+  GD  +P  PR K+ RP +    S
Sbjct: 420 RHNGESRPSRNHAPRDADNDLEVTSDFKRVKQAEGDAGRPAGPR-KQRRPARKPGGS 475