Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 503 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score =  322 bits (825), Expect = 2e-92
 Identities = 189/463 (40%), Positives = 264/463 (57%), Gaps = 30/463 (6%)

Query: 2   SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
           +F+ LGLS+ ++ AI  AGYT PTP+Q  AIP  L+ RD+   AQTGTGKT  F LP+L 
Sbjct: 3   TFSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLT 62

Query: 62  RLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNP 121
            L       +  R   R PR L+L PTRELAAQV ++F+ Y ++  L  A + GGV    
Sbjct: 63  LL-------EKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFED 115

Query: 122 QIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARL 181
           Q + + +G DVL+  PGRLLD   +GK+ +  VEILV+DEADRMLDMGFI D++++   +
Sbjct: 116 QDRKLERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMI 175

Query: 182 PAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASH-----K 236
           P  RQ L FSAT   +I  LAD+ L NP RIEV  P++T + + QR+    A+H     K
Sbjct: 176 PFTRQTLFFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIV---AAHNKDYEK 232

Query: 237 RALLAHLITLGAWE--QVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALAD 294
           RA+L  L+     E    ++F   K     L   L++ G +  A+HG+  Q +RT  L +
Sbjct: 233 RAVLRDLVRAEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQN 292

Query: 295 FKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVA 354
           F+   + +LVA+D+AARGLDI  + HV NF++P   EDYVHRIGRTGRAGRSG+A +LV 
Sbjct: 293 FRDGQLTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVT 352

Query: 355 PDEEKLLKSIERVTKQRI--ADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGEG 412
             + K L +IE++  ++I    GDL    A     E    R   +     GR++  R   
Sbjct: 353 KSDAKYLDAIEKLIAEKIEWLSGDLSSLPAPMESFESNSGRRGTKERSGRGRDRNRRDAP 412

Query: 413 GKDTNGGRKD-----------KGKDKGKARQQAAAKPDDKEKS 444
                   +D            G+DK KA ++    P + E++
Sbjct: 413 ASPVENINQDAQSVVDTDIAAHGEDKVKAERRPEKTPRNSERN 455



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 524 SNAGGQGQARNGGQPRSGGGEKRPPRANNGGGARRDGGGGRGRPARDDAARQEPAVRNPR 583
           SN+G     R G + RSG G  R  R              +     D AA  E  V+  R
Sbjct: 389 SNSG-----RRGTKERSGRGRDRNRRDAPASPVENINQDAQSVVDTDIAAHGEDKVKAER 443

Query: 584 QPEKQP 589
           +PEK P
Sbjct: 444 RPEKTP 449