Pairwise Alignments

Query, 262 a.a., putative Periplasmic binding protein from Pseudomonas putida KT2440

Subject, 245 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 71.2 bits (173), Expect = 2e-17
 Identities = 59/248 (23%), Positives = 106/248 (42%), Gaps = 11/248 (4%)

Query: 1   MPHIARLFWILLLVCLSPLALGERLRLVTDDWAPYVFQH--NGQPRGIDYEVASQVFARL 58
           MP  +R   ++ ++ L+  A  +RLRLV D W P+      NG   G+  ++ S   AR 
Sbjct: 1   MPRFSRAVALIGVLLLAQPAFAQRLRLVADAWPPFTDATLING---GLATDIVSTALARA 57

Query: 59  GVEVEWQFLPWKRCLAMAEQGLADGILDIFQTDARQPYMVYGAE-PMSEVEFVLFQSRSR 117
           G   +++ +PW R L     G  D +++ +  DAR     +  E  ++ V F+  + R  
Sbjct: 58  GYASDFEQVPWARALMGVGDGRYDVLVNAWYDDARTQLGQFSGEYLLNRVRFI--KRRDD 115

Query: 118 RHAVTHLDDLAGLTVGTSPGYAYGKGFTEAPHFKREAAPTQEANFGKLILGRIDLVITDR 177
                +L+ L    +    GYAY   F      ++            L   R+ L + D 
Sbjct: 116 PIEFQNLEQLHDYPIAVVRGYAYSAAFDGDAQLQKVPVHNFAMAVRMLAAQRVRLTVEDE 175

Query: 178 RVGHYLL--RQLGLQQQVEELPLVISRQAQY-LGLVRKPGREALAVAFAEELQRFKQEPA 234
            V  Y L      ++  VE LP  +S  + + L  ++ P    +  +F  E+ + K + +
Sbjct: 176 YVARYYLSRESTRVRNTVEFLPKPLSENSLHILVSLKNPEHAQIVASFDREIAKMKADGS 235

Query: 235 YAAISNRY 242
           YA +  ++
Sbjct: 236 YARLMKQH 243