Pairwise Alignments

Query, 566 a.a., DNA ligase B from Pseudomonas putida KT2440

Subject, 554 a.a., NAD-dependent DNA ligase LigB from Pseudomonas simiae WCS417

 Score =  589 bits (1518), Expect = e-172
 Identities = 292/555 (52%), Positives = 366/555 (65%), Gaps = 6/555 (1%)

Query: 5   LLFALLFVLNTPLARAASCPHWNPQQAKAEVAQLRATLARWDEHYHRQGIALVADELYDQ 64
           LL ALL  +      A  CP      A+A+V  L   +  WD+ YHR   + V+DELYDQ
Sbjct: 4   LLLALLLSILPFRGWAEECP----DTARAQVNTLTEQIRLWDDSYHRLNQSPVSDELYDQ 59

Query: 65  SHERLNHLQQCFAVGTSP--SPLASARGPVPHPVPHTGVDKLADRQAVARWMTGKTGVWV 122
           +H+RL H ++CF        +PLAS+RG + HP+ HTG++KL D QAV  W++ +  VW+
Sbjct: 60  AHQRLTHWRRCFPESPPKPDNPLASSRGTLRHPIAHTGLEKLLDEQAVGAWLSTRQDVWI 119

Query: 123 QPKVDGVAVSLTYQQGRLVQLTSRGDGVHGHDWSRHIPQLGAVTRQLPEAVDLHLQGELY 182
           QPKVDGVAV+L Y+QGRL Q+ SRGDG+ GHDWS    ++  + +QLPE +DL LQGELY
Sbjct: 120 QPKVDGVAVTLVYRQGRLRQVISRGDGLMGHDWSASARRIPGIVQQLPEPIDLVLQGELY 179

Query: 183 LRLDEHVQAKAGSANARGTVAGLLARKQLTGAQGNAIGLFVWGWPHGPEQQAERLAQLAR 242
             LD+HVQ+  G  NAR  VAGL+ R +L+ A    IGLFVW WP GP    ERLA LAR
Sbjct: 180 WHLDDHVQSANGGLNARSKVAGLMNRLELSDADAAGIGLFVWAWPEGPGSFTERLAALAR 239

Query: 243 LGFPDSQLYSIAIDTLEDAAHWREHWYRSALPFATDGVILRQGSRPPAERWQAKAPYWIA 302
            GF DS+ YS  I  + +A HWR +WY   LPFA+DGV+L Q  RPPA RW+A  PYW  
Sbjct: 240 WGFTDSRRYSQPIRDIAEATHWRAYWYNHPLPFASDGVVLHQAQRPPARRWKASEPYWAV 299

Query: 303 AWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRRITQVSLGSLARWQRLDIRP 362
           AWKYP A+ALA VR+VRF++GRTGR+TP+L ++PV LDDR+I++VS GSL RWQ LDIRP
Sbjct: 300 AWKYPAAKALALVRNVRFKIGRTGRITPMLELEPVQLDDRQISRVSAGSLKRWQTLDIRP 359

Query: 363 GDQVAISLAGLTIPRLEHVVHRAVERQPITAPAPDQHHAHSCWQASEGCDEQFIARLTWL 422
           GDQV+ISLAG  IPRL+ V+ R   R  + AP P   HA SCWQ   GC+EQ +ARLTWL
Sbjct: 360 GDQVSISLAGQVIPRLDEVILRNAHRADLAAPDPRDFHALSCWQLDPGCEEQLLARLTWL 419

Query: 423 GGKQGLALPRTGPGTWRRLVEAGLVTSMTDWLQLDAERLQQAPGISRLTATQMLGSFDQA 482
            G QGLALP  G  TW  L++AGL+ S  DWL LD   L    G    + T++L S + A
Sbjct: 420 SGNQGLALPHIGRETWNVLIQAGLIASFLDWLTLDVAELANIEGFGDSSRTRVLESLNSA 479

Query: 483 RSRPFDQWLRALGVPIGKHLPLTGNWQALASRSAGQWQTVPGIGAKRSRQLVEFFAASEV 542
           R R F QWL+ALGVP      L G+WQ L +R    W  + GIG  R+ QL  FF   +V
Sbjct: 480 RQRSFAQWLKALGVPPAARNNLEGDWQTLVARDTQAWLAIDGIGPGRAAQLSAFFRDPQV 539

Query: 543 QAIAAQLAEAGIEGF 557
           QA+A  L  AGI+GF
Sbjct: 540 QALADTLRVAGIDGF 554