Pairwise Alignments

Query, 566 a.a., DNA ligase B from Pseudomonas putida KT2440

Subject, 560 a.a., NAD-dependent DNA ligase LigB from Dickeya dianthicola ME23

 Score =  434 bits (1115), Expect = e-126
 Identities = 226/560 (40%), Positives = 321/560 (57%), Gaps = 6/560 (1%)

Query: 1   MPYLLLFALLFVLNTPLARAASCPHWNPQQAKAEVAQLRATLARWDEHYHRQGIALVADE 60
           M Y  + A++  + + L  AASCP W   +A+ E+AQL   L +WD  Y+ QG + V D+
Sbjct: 1   MRYRYVLAVVLFVVSGLTEAASCPAWPSARAEQEIAQLGQQLTQWDHAYYEQGQSPVDDQ 60

Query: 61  LYDQSHERLNHLQQCFAVGTSPSPLA-SARGPVPHPVPHTGVDKLADRQAVARWMTGKTG 119
           +YDQ  + L   Q CF        +     G   HPV HTG+ KL++   + +W+     
Sbjct: 61  VYDQLRQTLATWQVCFQADVGRFAIGLPTTGKRLHPVAHTGLKKLSEPAELKQWIAQHHE 120

Query: 120 VWVQPKVDGVAVSLTYQQGRLVQLTSRGDGVHGHDWSRHIPQLGAVTRQLPEAVDLHL-Q 178
           +WVQPK+DGVAV+L Y+QG LV   SRG+G  G DW+  + Q+ +V +QL       + Q
Sbjct: 121 LWVQPKIDGVAVTLVYEQGHLVAAISRGNGRQGEDWTDKVRQMNSVAQQLSGVSGRQVFQ 180

Query: 179 GELYLRLDEHVQAKAGSANARGTVAGLLARKQLTGAQGNAIGLFVWGWPHGPEQQAERLA 238
           GELYL+++ H Q + G  NAR  VAG + RKQ +      IG+F+W WP GP     RLA
Sbjct: 181 GELYLQVEGHRQQQVGGINARAQVAGEMRRKQPSPLLSR-IGVFIWAWPDGPADMPTRLA 239

Query: 239 QLARLGFPDSQLYSIAIDTLEDAAHWREHWYRSALPFATDGVILRQGSRPPAERWQAKAP 298
           +L  LGF  +  Y+  + +LE  A WRE WYR+ LPF TDGV++RQ   P    WQ    
Sbjct: 240 KLRELGFGLTADYTQPVSSLEAVAQWRERWYRAPLPFVTDGVVVRQAREPAGRYWQDTPA 299

Query: 299 YWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRRITQVSLGSLARWQRL 358
            W  AWKYP    + EV DV   VGRTGR+T VL +QPV LDD+ +++V+LGS++RW++ 
Sbjct: 300 EWAVAWKYPLVNRVTEVTDVDVEVGRTGRMTVVLQLQPVILDDKTVSRVNLGSVSRWRQW 359

Query: 359 DIRPGDQVAISLAGLTIPRLEHVVHRAVERQPITAPAPDQHHAHSCWQASEGCDEQFIAR 418
           D+ PGD+V++SLAGL IPRL+ VV R   R+ IT P+       SC Q S  C  QF+AR
Sbjct: 360 DVLPGDRVSVSLAGLGIPRLDAVVWRGAVREAITVPSTSSFDVFSCLQWSRECQPQFLAR 419

Query: 419 LTWLGGKQGLALPRTGPGTWRRLVEAGLVTSMTDWLQLDAERLQQAPGISRLTATQMLGS 478
           L W+ G+ GL+L      TWRRL   G +  +  WL L+  +L  A       A ++   
Sbjct: 420 LVWMSGRNGLSLSGISEATWRRLTLRGTLVDVVSWLALEPAQLAAAGDFGEQQAERIHLQ 479

Query: 479 FDQARSRPFDQWLRALGVPI---GKHLPLTGNWQALASRSAGQWQTVPGIGAKRSRQLVE 535
             +AR +P   WL ALG+P+    +H     + + L  RSA +WQ   GIG +R++++ +
Sbjct: 480 LQRARRQPLRNWLLALGLPVPSRARHALDGASLEQLQQRSAAEWQQFSGIGVRRAQRIRD 539

Query: 536 FFAASEVQAIAAQLAEAGIE 555
           F    ++    A L E G++
Sbjct: 540 FLHHPDIARQLAWLNEQGVK 559