Pairwise Alignments

Query, 566 a.a., DNA ligase B from Pseudomonas putida KT2440

Subject, 682 a.a., NAD-dependent DNA ligase LigA from Dickeya dianthicola ME23

 Score =  142 bits (359), Expect = 3e-38
 Identities = 148/591 (25%), Positives = 257/591 (43%), Gaps = 70/591 (11%)

Query: 27  NPQQAKAEVAQLRATLARWDEHYHRQGIALVADELYDQSHERLNHLQ-QCFAVGTSPSPL 85
           N   A+  + +LR  +   D  YH +    + D  YD     L+ L+ Q  ++ T  SP 
Sbjct: 10  NVDTARRRIKELRILIRHHDIKYHSEDDPEILDSEYDLLKRELSELEIQHPSLVTPDSPT 69

Query: 86  AS-------ARGPVPHPVPHTGVD--------KLADRQAVARWMTGKTGVWV-QPKVDGV 129
                    A G + H VP   +D        K   ++   R    K  ++  + K+DG+
Sbjct: 70  QRVGAEPLVAFGTIKHEVPMLSLDNVFNEDGFKAFSKRVSERLKNDKELIFCCELKLDGL 129

Query: 130 AVSLTYQQGRLVQLTSRGDGVHGHDWSRHIPQLGAVTRQL-----PEAVDLHLQGELYLR 184
           AVSL Y+ G L + ++RGDG  G + + ++  + A+  +L     P+   L ++GE++++
Sbjct: 130 AVSLLYENGVLERASTRGDGTTGENITSNVRTIRAIPLRLEGDNIPQR--LEVRGEVFMK 187

Query: 185 ------LDEHVQAKAGS--ANARGTVAGLLAR--KQLTGAQGNAIGLFVWGWPHG---PE 231
                 L+E  +   G   AN R   AG L +   ++T  +      +  G   G   P+
Sbjct: 188 HKGFDALNEEARRTGGKVFANPRNAAAGSLRQLDPRITATRPLTFLCYGVGLVEGGTLPD 247

Query: 232 QQAERLAQLARLGFPDSQLYSIAIDTLEDAAHWRE-HWYRSALPFATDGVILRQGSRPPA 290
              +RL Q    G P S    +   +      +R+    R  L F  DGV+++       
Sbjct: 248 THWQRLMQFRDWGLPVSDRIRLCTGSEAVLDFYRQVEQGRETLGFDIDGVVIKVNELTLQ 307

Query: 291 ER--WQAKAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRRITQVS 348
           ER  + A+AP W  A+K+P  + L  +RDV F+VGRTG +TPV  ++PV +    ++  +
Sbjct: 308 ERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAGVVVSNAT 367

Query: 349 LGSLARWQRLDIRPGDQVAISLAGLTIPRLEHVV--HRAVERQPITAPAPDQHHAHSCWQ 406
           L +    +RL ++ GD+VA+  AG  IP++  VV   R  + +P+  P         C  
Sbjct: 368 LHNADEIERLGVQIGDRVAVRRAGDVIPQIVSVVLSERPADARPVVFP----EQCPVCGS 423

Query: 407 ASEGCDEQFIARLTWLGG----------------KQGLALPRTGPGTWRRLVEAGLVTSM 450
             E  + + + R T  GG                ++ L +   G     +LVE   V + 
Sbjct: 424 ELERVEGEVVTRCT--GGLFCGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKTP 481

Query: 451 TDWLQLDAERLQQAPGISRLTATQMLGSFDQARSRPFDQWLRALGV-PIGKHLPLT---- 505
            D  +L A  L     +   +A  ++ + ++A+S  F ++L ALG+  +G+    +    
Sbjct: 482 ADLFRLSAGILTGLDRMGPKSAQNLVNALNKAKSTTFARFLYALGIRDVGEATAASLAAH 541

Query: 506 -GNWQALASRSAGQWQTVPGIGAKRSRQLVEFFAASEVQAIAAQLAEAGIE 555
            G  +AL S      Q V  +G   +  +  F   +  Q +  +L    I+
Sbjct: 542 FGTLEALQSADLDALQQVQDVGIVVATHVRNFLDEAHNQQVIQELISENID 592