Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 442 a.a., DEAD/DEAH box helicase from Rhodanobacter sp000427505 FW510-R12

 Score =  269 bits (688), Expect = 1e-76
 Identities = 153/356 (42%), Positives = 219/356 (61%), Gaps = 16/356 (4%)

Query: 7   AFATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLN 66
           +F +L L+ A+L  L   GY   TPIQA ++P  L+G DL+A A+TG+GKTAAF + LL 
Sbjct: 2   SFDSLGLAPALLRALADYGYTQPTPIQAAAIPPALEGHDLLAAAQTGTGKTAAFALPLLQ 61

Query: 67  PIN---------PRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGP 117
            ++         PR     AL+L PTRELA Q+ + +R   +   ++   T+ GGV +GP
Sbjct: 62  KLSTSGQTMTRRPR-----ALILTPTRELAAQIHENMRDYGK-HIHVSAATIFGGVGMGP 115

Query: 118 QIASLEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKT 177
           QI +L  G  +++ TPGR+  HL + TL L  + TLVLDEADRMLDMGF  A+  I+   
Sbjct: 116 QINALRRGVDVVIATPGRLIDHLQQRTLDLSAVETLVLDEADRMLDMGFLPALKRILQSV 175

Query: 178 PSRRQTLLFSATYPAGIKQLAADFMRNPQQVKVESLHT-DNQIEQRFIEIDPQQRLEAVT 236
           P +RQTLLFSAT+   IK LA DFM NP+++ V + +T    +  +   +D  ++ + + 
Sbjct: 176 PKKRQTLLFSATFAPAIKALALDFMHNPREISVSAPNTVTTLVSHQVHPVDASRKRDLLL 235

Query: 237 RVLGHYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSS 296
            VL     +  + F  TK   + +V  L A G+ A A+HG+  Q  R + L  F +   +
Sbjct: 236 HVLSQDSRRQTLVFSRTKHGADKLVTFLNASGLRAAAIHGNKSQNARTRALADFKSGRVT 295

Query: 297 VLVATDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAE 352
           VLVATD+AARG+DI+ L +VIN +L   AE +VHR+GRTGRAG +G+A+SLV+  E
Sbjct: 296 VLVATDIAARGIDIEQLPIVINFDLPSVAEDYVHRIGRTGRAGMEGLALSLVSHDE 351