Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 459 a.a., ATP-dependent RNA helicase DbpA from Rhodanobacter sp000427505 FW510-R12

 Score =  481 bits (1238), Expect = e-140
 Identities = 250/453 (55%), Positives = 326/453 (71%), Gaps = 1/453 (0%)

Query: 8   FATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 67
           F+TLPL  A+LA+++ LGYA MTP+QAQSLP +L+G+D+IAQA+TGSGKTAAFG+ LL  
Sbjct: 4   FSTLPLKPALLASVDTLGYAEMTPVQAQSLPPMLQGRDVIAQAQTGSGKTAAFGLSLLQA 63

Query: 68  INPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHGAH 127
           ++      QALVLCPTRELADQV+K +R+LA    N+K+LTLCGG+ LGPQ+ASL H  H
Sbjct: 64  LDADTIRLQALVLCPTRELADQVSKAIRKLAANIPNVKLLTLCGGMPLGPQLASLSHDPH 123

Query: 128 IIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTLLFS 187
           I+VGTPGR+Q+HL +G+L   G+  LVLDEADRMLDMGF +AI  IIG+     QTLLFS
Sbjct: 124 IVVGTPGRVQEHLKRGSLHGGGIKVLVLDEADRMLDMGFSEAIDDIIGRIAKHHQTLLFS 183

Query: 188 ATYPAGIKQLAADFMRNPQQVKVES-LHTDNQIEQRFIEIDPQQRLEAVTRVLGHYRPQS 246
           ATYP  I+  +    ++P  V VE+     + IEQ+FIE++P Q+L+A+ ++L   R Q 
Sbjct: 184 ATYPDEIRAASQRVQKDPVVVTVEAPAARRSAIEQQFIEVEPAQKLDALAQLLAGERGQH 243

Query: 247 CVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAAR 306
            + FC  ++  + V   L  +G  A ALHGD+EQRDRD+VL  FANRS +VLVATDVAAR
Sbjct: 244 ALVFCNMRRDVDAVAQELDRRGYSALALHGDMEQRDRDEVLVRFANRSCNVLVATDVAAR 303

Query: 307 GLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIEALQNSP 366
           GLDI  L +V++ ++A D + H HR+GRTGRAGE G+A++L  P E  +A  IE  Q  P
Sbjct: 304 GLDIAALPLVLSYDVAHDPDTHTHRIGRTGRAGETGLAITLCTPRERPKAANIEEAQGVP 363

Query: 367 LRWDQLDSLKNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQVGKIAIF 426
           L W  L     +G    L  M TL I AGR+DKLRPGDILGALTGDAG+  K +GKI +F
Sbjct: 364 LPWRTLKLAPPRGKTLHLAPMKTLVIDAGRQDKLRPGDILGALTGDAGLEAKDIGKIDVF 423

Query: 427 DFQAFVAVERALAKQAMQRLNSGKIKGRALKVR 459
             +A+VA+ RALA +A++RL +G+IKGR  +VR
Sbjct: 424 ATRAYVAISRALANKALERLRAGRIKGRNFRVR 456