Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 444 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  262 bits (669), Expect = 2e-74
 Identities = 154/368 (41%), Positives = 219/368 (59%), Gaps = 11/368 (2%)

Query: 8   FATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 67
           FATL L   +L  LE LGY + TP+QAQ++P +L G+DL+A A+TG+GKTA F + LL  
Sbjct: 3   FATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLLQL 62

Query: 68  IN---PRYFG--CQALVLCPTRELADQVAKELRRLARAEDNIKILTLC--GGVSLGPQIA 120
           +    P+      +AL+LCPTRELA+QV   +   A+   N+ + T    GGVS+ PQ+ 
Sbjct: 63  LTMEGPKVAANSARALILCPTRELAEQVHASVAEYAQ---NLPLTTYAVYGGVSINPQMM 119

Query: 121 SLEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSR 180
            L  G  I+V TPGR+     +  L L+ L TLVLDEADRMLD+GF + +A+I    P +
Sbjct: 120 KLRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKK 179

Query: 181 RQTLLFSATYPAGIKQLAADFMRNPQQVKVESLHTD-NQIEQRFIEIDPQQRLEAVTRVL 239
           RQTLLFSAT+   I+ LA   + +P  ++V   +   N ++Q  + +D +++ E    ++
Sbjct: 180 RQTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELFVHLM 239

Query: 240 GHYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLV 299
              R +  + F  T+   + +V  L   GI A  +HGD  Q  R + L  F +    +LV
Sbjct: 240 RKGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQILV 299

Query: 300 ATDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAI 359
           ATDVAARGLDI+ L +V+N +L   AE ++HR+GRTGRAG  G A+SLV   E +   AI
Sbjct: 300 ATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAI 359

Query: 360 EALQNSPL 367
           E L    L
Sbjct: 360 EMLTRQTL 367