Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 557 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score =  279 bits (713), Expect = 2e-79
 Identities = 163/415 (39%), Positives = 238/415 (57%), Gaps = 2/415 (0%)

Query: 1   MTTESTAFATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAF 60
           MT E+  FA   L+  +LA + A GY   + IQ QS+P+I+ G+D+I QA+TG+GKTAAF
Sbjct: 1   MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAF 60

Query: 61  GIGLLNPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIA 120
            + +L+ I+P     QAL+L PTRELA QVA      A+    + ++ + GG  +GPQ+ 
Sbjct: 61  ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK 120

Query: 121 SLEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSR 180
           ++ +GA I+V TPGR+  HL +   VL  +N LVLDEAD ML +GF D +  I    P  
Sbjct: 121 AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT 180

Query: 181 RQTLLFSATYPAGIKQLAADFMRNPQQVKVES-LHTDNQIEQRFIEIDPQQRLEAVTRVL 239
           RQT+LFSAT P  I+ +A   +R+P+ VK+++   T   IEQ  + +   Q+  AV  +L
Sbjct: 181 RQTVLFSATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL 240

Query: 240 GHYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLV 299
                 + + F  TKQ   D+ + L AKG  A AL+GD+ Q  R++V+    +    ++V
Sbjct: 241 EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV 300

Query: 300 ATDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAI 359
           ATDVAARGLD+  +  V NV++  D E +VHR+GRTGRAG +G A+ LV P E    Q I
Sbjct: 301 ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI 360

Query: 360 EALQNSPLRWDQLDSLKNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAG 414
           E +    +   +L   +      +  +  +L       +    GD+L  LT D G
Sbjct: 361 ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTH-GDLLDRLTADIG 414



 Score = 36.6 bits (83), Expect = 2e-06
 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 12/131 (9%)

Query: 337 RAGEKGVAVSLVA--------PAEGHRAQAIEALQNSPLRWDQLDSLKNKGGEPLLPVMT 388
           R    G A++L A        P    R    E   + P R D+    + +   PL     
Sbjct: 426 RKATNGQALTLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDR----ERRAPVPLAEGRA 481

Query: 389 TLCIAAGRKDKLRPGDILGALTGDAGIPGKQVGKIAIFDFQAFVAVERALAKQAMQRLNS 448
               A G +D +   ++LGA+  + G+  + +G+I + D  + V +     ++ + +L  
Sbjct: 482 RCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLKD 541

Query: 449 GKIKGRALKVR 459
            ++ G+ LK+R
Sbjct: 542 TRVAGKQLKLR 552