Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 476 a.a., ATP-dependent 23S rRNA helicase DbpA from Variovorax sp. SCN45

 Score =  525 bits (1353), Expect = e-153
 Identities = 273/464 (58%), Positives = 340/464 (73%), Gaps = 4/464 (0%)

Query: 2   TTESTAFATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFG 61
           T     FA L LS  MLANL  LGY  MTPIQA +LP  L G+DLIAQAKTGSGKTAAF 
Sbjct: 11  TPADNGFAALALSPQMLANLTQLGYTQMTPIQAAALPPALLGKDLIAQAKTGSGKTAAFA 70

Query: 62  IGLLNPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIAS 121
           + LL  +N R F  QA+VLCPTRELADQV  E+RRLARAE+NIK++TLCGGV+L  Q+AS
Sbjct: 71  LALLANLNARRFAIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRGQVAS 130

Query: 122 LEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRR 181
           LEHGAHI+VGTPGRI  HL++  L L  LNTLVLDEADRMLDMGFFD I ++  + P  R
Sbjct: 131 LEHGAHIVVGTPGRIMDHLERENLDLSALNTLVLDEADRMLDMGFFDDIVTVARQCPKER 190

Query: 182 QTLLFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQIEQRFIEIDPQQRLEAVTRVLGH 241
           QTLLFSATYP GI +LA  FM+NP+Q+ V++ H  ++I QR+ +I   +RL AV+ +L H
Sbjct: 191 QTLLFSATYPEGIAKLAQQFMKNPEQITVQAQHEGSKIRQRWYQIKDSERLHAVSLLLDH 250

Query: 242 YRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVAT 301
           +RP S +AFC TKQQC D+V  L A+G  A AL G+LEQR+RDQVL  FANRS SVLVAT
Sbjct: 251 FRPVSTLAFCNTKQQCRDLVDVLQAQGFSALALFGELEQRERDQVLVQFANRSCSVLVAT 310

Query: 302 DVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGE----KGVAVSLVAPAEGHRAQ 357
           DVAARGLDI  L+ VINV++  D+EIH+HRVGRTGR G+    +G+A++L +  E     
Sbjct: 311 DVAARGLDISQLEAVINVDVTPDSEIHIHRVGRTGRVGQQGAAEGLALNLASMNEMGFVG 370

Query: 358 AIEALQNSPLRWDQLDSLKNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPG 417
            IE LQ     W +L  L    G PL P M TL I  GRK+K+R GD+LGALTGD G   
Sbjct: 371 KIEQLQGRESEWHELSELTPGKGSPLKPPMATLQIVGGRKEKIRAGDVLGALTGDCGYAK 430

Query: 418 KQVGKIAIFDFQAFVAVERALAKQAMQRLNSGKIKGRALKVRII 461
            QVGKI + +F  +VAV+RA+A +A ++L+SG++KG+++KVR++
Sbjct: 431 DQVGKINVNEFSTYVAVDRAIAAEAARKLSSGRVKGKSVKVRLL 474