Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 489 a.a., ATP-dependent RNA helicase Bcep18194_A5658 from Variovorax sp. SCN45

 Score =  247 bits (631), Expect = 5e-70
 Identities = 139/363 (38%), Positives = 212/363 (58%), Gaps = 10/363 (2%)

Query: 5   STAFATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGL 64
           +++F+ L L+  +   +  +GY +MTPIQ Q++PV+L GQD++  A+TG+GKTAAF + L
Sbjct: 2   TSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPL 61

Query: 65  LNPI--------NPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLG 116
           L  +        +P     +ALVL PTRELADQVA++++  A+   N++   + GG+ + 
Sbjct: 62  LQRMLKHENASTSPARHPVRALVLLPTRELADQVAQQIKLYAKYT-NLRSTVVFGGIDMK 120

Query: 117 PQIASLEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGK 176
           PQ   L+ G  ++V TPGR+  H++    VL+ +  +VLDEADRMLD+GF   +  I+  
Sbjct: 121 PQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY 180

Query: 177 TPSRRQTLLFSATYPAGIKQLAADFMRNPQQVKV-ESLHTDNQIEQRFIEIDPQQRLEAV 235
            P +R TLLFSAT+   IK+LA+ +++NP  ++V     T + +EQ F  +    +  A+
Sbjct: 181 LPKQRTTLLFSATFSPEIKRLASSYLQNPITIEVARPNETASTVEQHFYSVSDDDKRRAL 240

Query: 236 TRVLGHYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSS 295
            +++          F  +K  C  +   L   G+   ALHGD  Q +R + L  F     
Sbjct: 241 KQIVRQRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEV 300

Query: 296 SVLVATDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHR 355
            +LV TDVAARGLDI  +  V N ++  +AE +VHR+GRTGRAG  G+AVS  +     R
Sbjct: 301 DLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASGGNDAR 360

Query: 356 AQA 358
             A
Sbjct: 361 LVA 363