Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 463 a.a., ATP-dependent RNA helicase Atu1833 from Sphingobium sp. HT1-2

 Score =  257 bits (656), Expect = 6e-73
 Identities = 150/360 (41%), Positives = 220/360 (61%), Gaps = 8/360 (2%)

Query: 8   FATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 67
           FA L LS  +L  +   GY + TPIQAQ++P +L  +D+I  A+TG+GKTA+F + +++ 
Sbjct: 3   FADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMIDI 62

Query: 68  I---NPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH 124
           +     R    ++L+L PTRELA QVA+   +  +    + +  L GGV +G QI +LE 
Sbjct: 63  LAHGRARALMPRSLILEPTRELAAQVAENFEKYGKYH-KLSMALLIGGVQMGDQIKALEK 121

Query: 125 GAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTL 184
           G  +++ TPGR+     +G ++L+G N LV+DEADRMLDMGF   I  I  K P++RQTL
Sbjct: 122 GVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTKLPAQRQTL 181

Query: 185 LFSATYPAGIKQLAADFMRNPQQVKVESLHT-DNQIEQRFIEIDPQQRLEAVTRVLGHYR 243
           LFSAT P  IK+LA  F+ NP+ ++V    T    I QR +++D +++ EA+  +L    
Sbjct: 182 LFSATMPPVIKKLADRFLDNPKSIEVARPATASTNITQRLVKVDSRKKREALRAMLEAED 241

Query: 244 PQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDV 303
            QS V FC  K    ++   L   G  +  +HGD++Q  R   L  F + S ++LVA+DV
Sbjct: 242 VQSAVIFCNRKTTVRELNKSLQRHGFKSGEIHGDIDQASRIAELERFRDGSVNILVASDV 301

Query: 304 AARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIEALQ 363
           AARGLDI G+  V N +     + +VHR+GRTGRAG KGVA + VA  +   A+AI+ +Q
Sbjct: 302 AARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVAAED---AEAIDNIQ 358