Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 559 a.a., ATP-dependent DEAD-box RNA helicase DeaD from Pseudomonas putida KT2440

 Score =  283 bits (724), Expect = 1e-80
 Identities = 157/361 (43%), Positives = 221/361 (61%), Gaps = 1/361 (0%)

Query: 1   MTTESTAFATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAF 60
           MT E+  FA L L+  ++A + A GY   + IQ QS+P+IL G D+I QA+TG+GKTAAF
Sbjct: 1   MTQETGGFAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF 60

Query: 61  GIGLLNPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIA 120
            + +LN I+      QAL+L PTRELA QVA      A+    + ++ + GG  +GPQ+ 
Sbjct: 61  ALPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLR 120

Query: 121 SLEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSR 180
           ++ +GA I+V TPGR+  HL +   VL  +  LVLDEAD ML +GF D +  I    P+ 
Sbjct: 121 AIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPAT 180

Query: 181 RQTLLFSATYPAGIKQLAADFMRNPQQVKVES-LHTDNQIEQRFIEIDPQQRLEAVTRVL 239
           RQT+LFSAT P+ I+ +A   +R P+ VK+++   T   IEQ  + +   Q++ AV R+L
Sbjct: 181 RQTVLFSATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLL 240

Query: 240 GHYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLV 299
                 + +AF  TKQ   D+ A L AKG  A AL+GD+ Q  R++V+    +    ++V
Sbjct: 241 EVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV 300

Query: 300 ATDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAI 359
           ATDVAARGLD+  +  V NV++  D E +VHR+GRTGRAG  G A+ LV P E    Q I
Sbjct: 301 ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI 360

Query: 360 E 360
           E
Sbjct: 361 E 361



 Score = 35.4 bits (80), Expect = 5e-06
 Identities = 16/67 (23%), Positives = 36/67 (53%)

Query: 393 AAGRKDKLRPGDILGALTGDAGIPGKQVGKIAIFDFQAFVAVERALAKQAMQRLNSGKIK 452
           A G +D +   ++LGA+  + G+    +G+I + D  + V +     ++ + +L   ++ 
Sbjct: 488 ALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEKLLSKLKDTRVA 547

Query: 453 GRALKVR 459
           G+ LK+R
Sbjct: 548 GKQLKLR 554