Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 457 a.a., ATP-dependent RNA helicase DbpA from Dickeya dianthicola ME23

 Score =  475 bits (1223), Expect = e-138
 Identities = 254/457 (55%), Positives = 314/457 (68%), Gaps = 3/457 (0%)

Query: 6   TAFATL-PLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGL 64
           T+FA L  L   +L  L  LGY +MTPIQA +LP IL G+D+ AQAKTGSGKTAAFG+GL
Sbjct: 2   TSFAELNALPAELLTTLNELGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGL 61

Query: 65  LNPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH 124
           L  ++   F  Q+LVLCPTRELADQVA ELRRLAR   NIK+L LCGGV    Q  SL H
Sbjct: 62  LQHLDAGQFNTQSLVLCPTRELADQVANELRRLARYMPNIKVLALCGGVPFSIQRDSLIH 121

Query: 125 GAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTL 184
             HIIV TPGR+  HL K T+  D L TLVLDEADRMLDMGF DAI  IIG  P++RQTL
Sbjct: 122 APHIIVATPGRLLDHLKKDTISFDALQTLVLDEADRMLDMGFADAINEIIGHIPAQRQTL 181

Query: 185 LFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQIEQRFIEIDPQQRLEAVTRVLGHYRP 244
           LFSAT+P  I  ++    R+P  + ++S+     +EQ+F E+    +L+ + ++L   +P
Sbjct: 182 LFSATWPDAIAAISHRIQRDPLTIAIDSVDELPAVEQQFYEVSRNGKLDLLQKLLSREQP 241

Query: 245 QSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVA 304
            SCV FC TK+ C+ V   LT       ALHGD+EQRDRDQ L  FAN SS VLVATDVA
Sbjct: 242 ASCVVFCNTKKDCQAVYDALTDSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVA 301

Query: 305 ARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIEALQN 364
           ARGLDI  L+MVIN EL+ D E+HVHR+GRT RAGE G+A+SL AP E  RA A+E + N
Sbjct: 302 ARGLDIKALEMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANALEEMLN 361

Query: 365 SPLRWDQLDSLKNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQVGKIA 424
             L W  L +       PL   M TLCI  G+K K+RPGDILGALTGD G+ G  +GKIA
Sbjct: 362 MKLNWHPLPT--GLHITPLEATMATLCIDGGKKAKMRPGDILGALTGDMGLDGADIGKIA 419

Query: 425 IFDFQAFVAVERALAKQAMQRLNSGKIKGRALKVRII 461
           I    A+VAV++++A+   ++L  GKIKG+A+KVR++
Sbjct: 420 IHPMHAYVAVKQSVARHVWKQLQQGKIKGKAVKVRLL 456