Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 628 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Dickeya dianthicola ME23

 Score =  266 bits (679), Expect = 2e-75
 Identities = 148/361 (40%), Positives = 216/361 (59%), Gaps = 1/361 (0%)

Query: 1   MTTESTAFATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAF 60
           M    T+FA+L LS  +L+ L  LGY   +PIQA+ +P +L G+D++  A+TGSGKTAAF
Sbjct: 1   MAEFETSFASLGLSAPILSALSELGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60

Query: 61  GIGLLNPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIA 120
            + LLN I       Q LVL PTRELA QVA+     ++    + ++ L GG     Q+ 
Sbjct: 61  SLPLLNNIKAELKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLR 120

Query: 121 SLEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSR 180
           +L  G  I+VGTPGR+  HL +GTL L  L+ LVLDEAD ML MGF + + +I+ + P+ 
Sbjct: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE 180

Query: 181 RQTLLFSATYPAGIKQLAADFMRNPQQVKVE-SLHTDNQIEQRFIEIDPQQRLEAVTRVL 239
            QT LFSAT P  I+++   FM++PQ+V+++ S+ T   I Q +  +   ++ EA+ R L
Sbjct: 181 HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFL 240

Query: 240 GHYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLV 299
                 + + F  TK    +V   L   G  + AL+GD+ Q  R+Q L    +    +L+
Sbjct: 241 EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI 300

Query: 300 ATDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAI 359
           ATDVAARGLD++ + +V+N ++  D+E +VHR+GRTGRAG  G A+  V   E    + I
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360

Query: 360 E 360
           E
Sbjct: 361 E 361



 Score = 28.9 bits (63), Expect = 5e-04
 Identities = 12/70 (17%), Positives = 32/70 (45%)

Query: 392 IAAGRKDKLRPGDILGALTGDAGIPGKQVGKIAIFDFQAFVAVERALAKQAMQRLNSGKI 451
           I  GR D +    I+GA+  +  I  + +G I +F   + + + + +    +      +I
Sbjct: 492 IEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGDLLSHFTRTRI 551

Query: 452 KGRALKVRII 461
             + + ++++
Sbjct: 552 LNKPMNMQLM 561