Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 567 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  304 bits (778), Expect = 6e-87
 Identities = 155/344 (45%), Positives = 229/344 (66%), Gaps = 1/344 (0%)

Query: 6   TAFATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLL 65
           T FA L +S  +L  +E +GY   + IQAQS+P++L+G D+I QA+TG+GKTA+FGI ++
Sbjct: 5   TLFADLGISAEILQAVEGMGYTQPSEIQAQSIPLMLEGHDVIGQAQTGTGKTASFGIPIV 64

Query: 66  NPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHG 125
           + ++      QAL+LCPTRELA QV  E+ +LA+ +  I    + GG ++  QI +L+ G
Sbjct: 65  DRVDSSSKQPQALILCPTRELAVQVEGEITKLAKYKKGIFSTAIYGGEAIDRQIRTLKRG 124

Query: 126 AHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTLL 185
             I+VGTPGR+  H+++GTL LD + T+VLDEAD MLDMGF + I +++ + P  RQT+ 
Sbjct: 125 VQIVVGTPGRVMDHMNRGTLKLDTVKTIVLDEADEMLDMGFREDIETVLSQMPEDRQTIF 184

Query: 186 FSATYPAGIKQLAADFMRNPQQVKVESLH-TDNQIEQRFIEIDPQQRLEAVTRVLGHYRP 244
           FSAT    I  L   +  NP+ VK++    T   I Q + E+ P  ++E +TR++  ++ 
Sbjct: 185 FSATMAKPIMDLTRKYQTNPEIVKIQRKELTVENISQVYYEVKPPLKMELITRLINIHQF 244

Query: 245 QSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVA 304
              V FC TK+  ++V   L A+GI+A+ALHGDL Q  RD+V+  F     +VLVATDVA
Sbjct: 245 NLGVVFCNTKRATDEVTEGLIARGIMAEALHGDLSQAQRDKVMNKFRKGHCTVLVATDVA 304

Query: 305 ARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLV 348
           ARG+D+D +++V N +L  D E +VHR+GRTGRAG  G+A+S +
Sbjct: 305 ARGIDVDNVEVVFNYDLPLDEEYYVHRIGRTGRAGRSGMAISFI 348



 Score = 57.8 bits (138), Expect = 9e-13
 Identities = 28/74 (37%), Positives = 45/74 (60%)

Query: 387 MTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQVGKIAIFDFQAFVAVERALAKQAMQRL 446
           M+ L +  G+KD++RP DI+GA+ G+AGI G+ +G I IFD  +FV V    A   +  +
Sbjct: 491 MSRLFLNLGKKDRIRPNDIVGAIAGEAGISGRLIGGIDIFDNFSFVDVPSKDASHVINVM 550

Query: 447 NSGKIKGRALKVRI 460
               IKG+ + + +
Sbjct: 551 KRNTIKGKPVNMEL 564