Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 416 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  254 bits (650), Expect = 3e-72
 Identities = 147/364 (40%), Positives = 213/364 (58%), Gaps = 8/364 (2%)

Query: 8   FATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 67
           F  L +   +L  LE  GY   T IQAQ++P IL+G+D++  A+TG+GKTAAF I ++  
Sbjct: 3   FKDLRIIPPILKALEDKGYDEPTSIQAQAIPHILEGRDVLGCAQTGTGKTAAFAIPIIQH 62

Query: 68  I------NPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIAS 121
           I      N  +   ++L++ PTRELA Q+ + +   A+   N+    + GGV  G Q+A 
Sbjct: 63  IHEAPYANEPWAKIRSLIVTPTRELAIQIGENIDEYAK-NTNVSHTVIFGGVKQGAQVAQ 121

Query: 122 LEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRR 181
           L+ G HI+V TPGR+   +D+G + L  ++  VLDEADRMLDMGF + I  ++   P +R
Sbjct: 122 LKKGVHILVATPGRLLDLIDQGHISLKAIDLFVLDEADRMLDMGFINDIKKLLKILPKKR 181

Query: 182 QTLLFSATYPAGIKQLAADFMRNPQQVKVESL-HTDNQIEQRFIEIDPQQRLEAVTRVLG 240
           Q+L FSAT P  I QL+ + + NPQ+V+V  +  T   I+Q     +   +   +  +L 
Sbjct: 182 QSLFFSATMPDNILQLSKEILDNPQKVEVTPVSSTAETIQQYIYYTNKSSKKSLLIHILE 241

Query: 241 HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 300
                  + F  TK   + +V  L  K I A A+HGD  Q  R +VL+ F +    VLVA
Sbjct: 242 KEGMDQVLLFSRTKHGADRIVRDLKKKHIKAAAIHGDKAQNQRQRVLSDFKDNKLRVLVA 301

Query: 301 TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIE 360
           TD+AARG+DID L  VIN ++    E ++HR+GR+GRAGE+G A+SL  P E    +AIE
Sbjct: 302 TDIAARGIDIDKLKYVINFDIPDTPETYIHRIGRSGRAGEEGTAISLCEPEENADVKAIE 361

Query: 361 ALQN 364
            L N
Sbjct: 362 KLAN 365