Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 521 a.a., DEAD/DEAH box helicase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  251 bits (642), Expect = 3e-71
 Identities = 143/354 (40%), Positives = 215/354 (60%), Gaps = 8/354 (2%)

Query: 6   TAFATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLL 65
           T F+ L LS   L  +   GY + TPIQ Q++PV L G+D++  A+TG+GKTAAF + L+
Sbjct: 2   TEFSQLGLSPTTLQAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPLV 61

Query: 66  NPINP---RYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASL 122
           + ++    R    +A+VL PTRELADQVA+   + A+    +  + L GGVS+G Q+A+L
Sbjct: 62  DRLSTGRARARMPRAIVLAPTRELADQVAESFAKYAKGT-KLSWVLLIGGVSMGDQVAAL 120

Query: 123 EHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQ 182
             G  +++ TPGR+    ++G ++L G+  +V+DEADRMLDMGF   I  I   TP RRQ
Sbjct: 121 NKGVDVLIATPGRLLDLFERGKMLLTGVEIMVVDEADRMLDMGFIPDIERIFKLTPPRRQ 180

Query: 183 TLLFSATYPAGIKQLAADFMRNPQQVKV-ESLHTDNQIEQRFIEI---DPQQRLEAVTRV 238
           TL FSAT P  I +L   F+++P +++      T + I Q  + I   DP+ +  A+  +
Sbjct: 181 TLFFSATMPPEITRLTTAFLKDPTRIEASRPAMTADTITQYIVRIPTSDPKAKRTALRAL 240

Query: 239 LGHYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVL 298
           +G    ++ + FC  K + + V   L   G  A  +HGDL+Q  R + L  F + +  +L
Sbjct: 241 VGREDVRNGIVFCNRKSEVDIVAKSLKTHGFDAAPIHGDLDQSHRMKTLADFRSGALKIL 300

Query: 299 VATDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAE 352
           VA+DVAARGLDI  +  V N +++  A+ +VHR+GRTGRAG+ G A  +V PA+
Sbjct: 301 VASDVAARGLDIPDVSHVFNYDVSHHADDYVHRIGRTGRAGKLGQAFMIVTPAD 354