Pairwise Alignments

Query, 475 a.a., Drug resistance transporter, EmrB/QacA family from Pseudomonas putida KT2440

Subject, 471 a.a., Putative multidrug resistance protein MdtD from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  405 bits (1041), Expect = e-117
 Identities = 213/454 (46%), Positives = 298/454 (65%), Gaps = 2/454 (0%)

Query: 9   PVTARWIPWVVAIAFFMQSLDGTILNTALPAMARSLAEDPLRMQGVIIAYMLTVALLIPA 68
           P + RW  W+VA  FFMQSLD TI+NTALP+MA+SL E PL M  VI++Y+LTVA+++PA
Sbjct: 5   PDSTRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPA 64

Query: 69  SGWIADRFGTKRIFFSAILLFSFGSLLCAAANSLGFLIFARVVQGLGGALMLPVGRLVVL 128
           SGW+AD+ G + IFF+AI+LF+ GSL CA + +L  L+ AR +QG+GGA+M+PVGRL V+
Sbjct: 65  SGWLADKVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARALQGVGGAMMVPVGRLTVM 124

Query: 129 RAYPRSELVRIMSFITIPGLLGPLLGPTVGGWLVEILSWHWIFLLNLPVGLLGCIAVWKF 188
           +  PR + +  M+F+T+PG +GPLLGP +GG LVE  SWHWIFL+N+PVG++G IA    
Sbjct: 125 KIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLLL 184

Query: 189 IPDLRGAERTTFDGPGFLLFGAAMVLITIAMEGLGELHLPHLRVMLLLFAGMACLAAYWL 248
           +P+     R  FD  GFLL    M ++T+A++G     L  L +  L+  G+  L  Y L
Sbjct: 185 MPNYTMQTR-RFDLSGFLLLAVGMAVLTLALDGSKGTGLSPLTIAGLVAVGVVALVLYLL 243

Query: 249 RAGRDPEPLFSPSLFRVRTFAIGILGNLFARLGSGALPFLVPLLLQVALGYSPAQAGMSM 308
            A  +   LFS  LFR RTF++G+ G+   R+GSG LPF+ P+ LQ+ LG+SP  AG+ M
Sbjct: 244 HARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMM 303

Query: 309 IPLAAAAMLAKSIARPLIERFGYRIILTGNTLLLGILLASLGLVDEQTPYWLLLVQLGLL 368
           IP+   +M  K I   ++ RFGYR +L   TL L ++            Y++L   L L 
Sbjct: 304 IPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLSLVTLLFMTTALLGWYYVLPFVLFLQ 363

Query: 369 GAVNSMQFTAMNTVTLIDLDDASASSGNSLLSVVAQLSLSLGVACAGALLGGFTAAGSAE 428
           G VNS +F++MNT+TL DL D  ASSGNSLLS++ QLS+S+GV  AG LLG F +   + 
Sbjct: 364 GMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGSQHVSV 423

Query: 429 GVETTLGAFQLTFVTIGVMAMLAAAIFLQLAPTD 462
              TT   F  T++++ ++  L A IF ++ P D
Sbjct: 424 DSGTTQTVFMYTWLSMALIIALPAFIFARV-PND 456