Pairwise Alignments

Query, 278 a.a., 23S rRNA m(6)A2030 methyltransferase from Pseudomonas putida KT2440

Subject, 290 a.a., Ribosomal RNA large subunit methyltransferase J from Xanthobacter sp. DMC5

 Score =  204 bits (520), Expect = 1e-57
 Identities = 120/287 (41%), Positives = 165/287 (57%), Gaps = 13/287 (4%)

Query: 1   MNYRHAFHAGNHADVLKHIVLTRLIALMSRKEQPFAYIDTHAGLGLYDLQGDQASRTGEY 60
           MNYRHAFHAGN ADV+KH  L R++A + +K+ P+  +DTHAG GLYDL G  A +TGE 
Sbjct: 1   MNYRHAFHAGNPADVMKHAALARVLAYLGKKDAPYRVLDTHAGAGLYDLDGINARKTGEA 60

Query: 61  LEGVARLWNRDD---LPAMADD----YLRIIKRLNADGELRYYPGSPELARRLMRQQDRA 113
             G+  +    D   LPA A      YL  ++ L   G  + YPGSP LA  L R QD+ 
Sbjct: 61  DAGIEAVLAAQDAGTLPAAAATLLAPYLDCVRGLREGGR-KLYPGSPALALALSRPQDKF 119

Query: 114 LLNEKHPEDGPLLKENMKKDP----RVTVHLGEGWHVPRALLPVQEKRAIMLIDPPFEQA 169
           L  E + E+   L++ + + P    RV V   +GW    A LP +E+R ++L+DPPFE+ 
Sbjct: 120 LFCELNKEERAKLEKRVGEAPGAEGRVKVLAQDGWQAIAAHLPPRERRGVVLVDPPFEEP 179

Query: 170 DELKRCTTAMKEAIGRMRQTVAAIWYPIKDQRSLTRYYQDLTSTGAPKLLRVELYVHHQD 229
           DE +R    ++ A  R    +  +WYPIKD R++  + +D+     PK LRVEL      
Sbjct: 180 DEFQRMVAGLEAAHRRFATGIFMLWYPIKDLRAVDAFRRDVAHLKLPKTLRVELDFAQVR 239

Query: 230 SPQGLNGSGLAIANPPWGLEDELKELLPWLAKELAQTA-GSYRMDWL 275
           +   L+GSGL I NPP+ L DE+K +L  LA  LA+   G  R+ WL
Sbjct: 240 ALDTLSGSGLIIVNPPFTLADEMKTVLNALAPLLARDGKGRARVSWL 286