Pairwise Alignments

Query, 278 a.a., 23S rRNA m(6)A2030 methyltransferase from Pseudomonas putida KT2440

Subject, 321 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) from Variovorax sp. SCN45

 Score =  153 bits (386), Expect = 5e-42
 Identities = 103/307 (33%), Positives = 141/307 (45%), Gaps = 43/307 (14%)

Query: 2   NYRHAFHAGNHADVLKHIVLTRLIALMSRKEQPFAYIDTHAGLGLYDLQGDQASRTGEYL 61
           +YRHAFHAGNHADVLKH VL   +  +  K+     +DTHAG GLY L GD A  +GE  
Sbjct: 3   SYRHAFHAGNHADVLKHTVLIATLDHLLEKDAALTVVDTHAGAGLYRLDGDYAGTSGEAA 62

Query: 62  EGVARLWNRDDLPA------------------------MAD---DYLRIIKRLNADGELR 94
           EG+ RL +    PA                        +AD    YL +I   N+ G  R
Sbjct: 63  EGILRLLSGKKEPAAPASAPAPAAKSAAKKAAPEAEAPLADAIARYLGVISDFNSKGGAR 122

Query: 95  YYPGSPELARRLMRQQDRALLNEKHPEDGPLLKEN---MKKDPRVTVHLGEGWHVPRALL 151
            YPGSP + + L+R  D+  L E HP D   L  N   ++   ++ V L +G+      L
Sbjct: 123 VYPGSPFIIQHLLRDHDKLKLFELHPTDSRTLSANIAQLEAGRQIAVLLEDGFGSATKFL 182

Query: 152 PVQEKRAIMLIDPPFEQADELKRCTTAMKEAIGRMRQTVAAIWYPI---KDQRSLTRYYQ 208
           P   +RA++L+DP +E   +  R      EA+ R      AIWYPI    +   L R  +
Sbjct: 183 PPPSRRALVLMDPSYEMKTDYGRVLDFAAEALKRFATGTYAIWYPIIPRPEAHDLPRRLK 242

Query: 209 DLTSTGAPKLLRVELYVHH----------QDSPQGLNGSGLAIANPPWGLEDELKELLPW 258
            + +      L   L V            +    GL  SG+ + NPP+ L+  L E LP 
Sbjct: 243 TMATKAGKSWLHATLTVKSSKITKDAASGETQRPGLPASGMFLINPPYTLKPLLAEALPQ 302

Query: 259 LAKELAQ 265
           L + L Q
Sbjct: 303 LVERLGQ 309