Pairwise Alignments

Query, 602 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas putida KT2440

Subject, 731 a.a., Cyclolysin secretion/processing ATP-binding protein CyaB from Pseudomonas putida KT2440

 Score =  266 bits (679), Expect = 3e-75
 Identities = 182/534 (34%), Positives = 284/534 (53%), Gaps = 8/534 (1%)

Query: 65  VLFPNVPYLRDLQLLQAVPLLIILIAAWQGLGSFLGNYFLAKVSLSLVHDLRVALFNKLL 124
           V+   V   R L  L  + L ++++  ++ L S L  Y  A  +  +  +L   LF  L+
Sbjct: 197 VVMDKVLVHRGLTTLDVIALGLLVVVLFETLLSGLRTYVAAHTASRIDVELGAKLFRHLI 256

Query: 125 VLPNRYFDNHNSGHLISRITFNVTMVTGAATDAIKVVIREGLTVVFLFAYLLWMNWHLTL 184
            LP  YF     G  ++R+     + +    ++I +V+    +VVF+    L+  W LTL
Sbjct: 257 DLPTAYFHARRVGDSVARVRELENIRSFLTNNSITLVLDVLFSVVFIAVMFLYSGW-LTL 315

Query: 185 VMVAILPVIAVMVSIASKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEQQR 244
           V+V  LP   ++  + +   R    +      +      E + G   ++S   E    +R
Sbjct: 316 VVVGSLPFYFLVSLVVTPLLRALIDQSFQRGAENQAFLVEAVNGIDTLKSMAVEPQVTRR 375

Query: 245 FGQASQSNTDKQLRMTKTGSLYTPMLQLVIYSAMAALMFLV--LFLRGDSTAGDLVAYIT 302
           +     +      +     SL    + L+      A ++L   L + G  T G+L+A+  
Sbjct: 376 WNDQLAAYVSASFKTQNLSSLANESVGLIGKLVTVATLWLGARLVIEGALTVGELIAFNM 435

Query: 303 AAGLLPKPIRQLSEVSSTIQKGLAGAESIFEQLDEAPEVDTG--TVEKERVEGRLEVRNL 360
            AG + +PI +L+++ ++ Q+     + + + L+   EV+ G  TV    V G++E+  +
Sbjct: 436 LAGRVSQPIIRLAQLWTSFQQTGVSIQRLGDILNTRTEVNQGKGTVLPTLV-GQIELDRV 494

Query: 361 SFTYPGTEREVLSDISFVAEPGQMIALVGRSGSGKSTLAALIPRFYHHDKGQILLDGVEI 420
            F Y     EV+ D+S     G++I +VGRSGSGKSTL  LI R Y  ++G++L DG ++
Sbjct: 495 CFRYRPDGGEVVRDVSLKIAAGEVIGVVGRSGSGKSTLTRLIQRLYSPERGRVLPDGADL 554

Query: 421 EHYRLRNLRRHVSQVTQHVTLFNDTVANNIAYGDLAGAPRADIEAAAADAYAKEFVDRLP 480
               + +LRR +  V Q   LF  TV  NIA G+ A AP  ++ AAA  A A EF+  LP
Sbjct: 555 AVADVASLRRQIGVVLQDNVLFRRTVRENIALGNPA-APLEEVIAAATLAGAHEFILELP 613

Query: 481 KGFDTEVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVM 540
            G++T +GE+G  LSGGQRQR+AIARAL  N  +LI DEATSALD ESER IQ  +  + 
Sbjct: 614 DGYETLIGEHGASLSGGQRQRIAIARALFGNPRILIFDEATSALDYESERIIQQNMARIC 673

Query: 541 QGRTTLVIAHRLSTIEKADQILVMDQGRLVERGTHTELLA-ANGHYARLHAMGL 593
             RT ++IAHRLS +  AD+I+VM++G+++E+GTH ELL    G YA LH + L
Sbjct: 674 AQRTVIIIAHRLSAVRHADRIVVMERGQIIEQGTHDELLGYPQGTYAYLHQLQL 727