Pairwise Alignments

Query, 602 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas putida KT2440

Subject, 587 a.a., putative ABC efflux transporter, permease/ATP-binding protein from Pseudomonas putida KT2440

 Score =  312 bits (800), Expect = 2e-89
 Identities = 206/578 (35%), Positives = 330/578 (57%), Gaps = 23/578 (3%)

Query: 23  YVKPYVGIFLLSIVGFVIFASTQPMLAGILKYFVD-GLSNPEAVLFPNVPYLRDLQLLQA 81
           +V+PY    LL+++  V+ A+    +   ++  VD G     A            QL Q 
Sbjct: 19  FVRPYRRQVLLALLALVVTAAITLSMGQGIRLLVDQGFMTRSAH-----------QLNQT 67

Query: 82  VPLLIILIAAWQGLGSFLGNYFLAKVSLSLVHDLRVALFNKLLVLPNRYFDNHNSGHLIS 141
           + L ++L+ A   +G+F   Y ++ +    V D+R A+F+ L+ L   +F+++ S  + S
Sbjct: 68  IGLFLLLVLAL-AVGTFSRFYLVSWIGERCVADIRRAVFDHLIGLHPGFFEDNRSSEIQS 126

Query: 142 RITFNVTMVTGAATDAIKVVIREGLTVVFLFAYLLWMNWHLTLVMVAILPVIAVMVSIAS 201
           R+T + T++      ++ + +R  L V+     L   N  LT ++V  LP++   + +  
Sbjct: 127 RLTADTTLLQSVIGSSLSMFLRNALMVIGGVVLLFITNPKLTSIVVVTLPLVLAPILLFG 186

Query: 202 KKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEQQRFGQASQSN-TDKQLRMT 260
           ++ R  S++ Q  + DV    +ET+   + V+++  +A++++ F    ++  T  + R+T
Sbjct: 187 RRVRSLSRQSQDRVADVGSYVAETLGQIKTVQAYNHQAHDRELFADTVEAAFTVARKRIT 246

Query: 261 KTGSLYTPMLQLVIYSAMAALMFL--VLFLRGDSTAGDLVAYITAAGLLPKPIRQLSEVS 318
           +   L T ++ LV+  A+  ++++  +  + G  +AG+L A++  + ++      LSEV 
Sbjct: 247 QRAWLITLVIVLVL-GAVGVMLWVGGMDVIAGRISAGELAAFVFYSLIVGSAFGTLSEVI 305

Query: 319 STIQKGLAGAESIFEQLDEAPEV---DTGTV-EKERVEGRLEVRNLSFTYPGTEREVLSD 374
             +Q+    AE I E L     +   D   V  + R  G +E++ + F YP        D
Sbjct: 306 GELQRAAGAAERIAELLAARSAILPPDVAQVLPQPRASGHIELQQVVFAYPSRPTVAAVD 365

Query: 375 -ISFVAEPGQMIALVGRSGSGKSTLAALIPRFYHHDKGQILLDGVEIEHYRLRNLRRHVS 433
            +S   EPGQ +ALVG SG+GKSTL  L+ RFY   +G+ILLDG  +  +    LRR  +
Sbjct: 366 GLSLTIEPGQTVALVGPSGAGKSTLFDLLLRFYDPQQGRILLDGQPVTDFDPDQLRRQFA 425

Query: 434 QVTQHVTLFNDTVANNIAYGDLAGAPRADIEAAAADAYAKEFVDRLPKGFDTEVGENGVL 493
            V Q+ +LF  TV  NI YG    A  A++EAAA  A+A EF+ +LP+G+ T +GE G+ 
Sbjct: 426 LVAQNPSLFRGTVEANIRYGR-PEATLAEVEAAARGAHADEFIRQLPQGYQTPLGEGGIG 484

Query: 494 LSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMQGRTTLVIAHRLS 553
           LSGGQRQRLAIARALL +AP+L+LDEATSALD +SE  IQ AL  +M GRTTLVIAHRL+
Sbjct: 485 LSGGQRQRLAIARALLVDAPILLLDEATSALDAQSEYLIQQALPSLMAGRTTLVIAHRLA 544

Query: 554 TIEKADQILVMDQGRLVERGTHTELLAANGHYARLHAM 591
           T++ A++I V+DQGRLV  GTH +L+  +  YARL A+
Sbjct: 545 TVQHAERIAVIDQGRLVAVGTHRQLIEDSPLYARLAAL 582