Pairwise Alignments

Query, 472 a.a., HlyD family secretion protein from Pseudomonas putida KT2440

Subject, 356 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

 Score = 50.8 bits (120), Expect = 7e-11
 Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 8/161 (4%)

Query: 249 LEKEQARLEQERELAL-QRSRIDELNAARLAAQHRRSGAIAQLRRAMLDLH-GEAQRRIA 306
           +E + A ++Q R  A+   +R  +L A  LAA  RR     Q++ A +D    EA+ ++ 
Sbjct: 113 VEAQIAAVQQARATAMIDVNRTSQLYAEGLAA--RRDYEQTQIKVADVDAKLAEARAKLK 170

Query: 307 TLEQELNKAEQRHRLKVLTSPVDGTVQQLAIHTQGGVVTPAQTLMVIVPTGEPVEVEVKV 366
            +E +L ++  +    ++++P +G VQ L     G +++    L  I P      VE+ V
Sbjct: 171 QIEIKLAQSSAQ----IVSAPREGRVQDLNAAAGGALISSGTVLATIAPENITRAVELYV 226

Query: 367 ENKDIGFVFPGQHVEVKIETFTFTRYGVVPGVVESISDDAI 407
           + +D+  V PG+ V ++ E F   ++   P     I D  +
Sbjct: 227 DGRDVPLVEPGRSVRLEFEGFPAFQFSGWPAFAVGIYDGQV 267



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 18/128 (14%)

Query: 104 VQSIHVVDGQPVRKGDVLVEL----EGQLTEADIKRLGSELLAAQIDQARASTLLSALDG 159
           V   +V DG  VR GD +V +       L     ++   E   A + QARA+ ++     
Sbjct: 75  VAEFYVRDGDHVRAGDPIVRVVDVDPDFLARLAGEKAQVEAQIAAVQQARATAMI----- 129

Query: 160 DVAPASLAPLIPQATAAQQAGAQRWL-----EGQYLELQATLEQADAEIGQRAAEIRSA- 213
           DV   S   L  +  AA++   Q  +     + +  E +A L+Q + ++ Q +A+I SA 
Sbjct: 130 DVNRTS--QLYAEGLAARRDYEQTQIKVADVDAKLAEARAKLKQIEIKLAQSSAQIVSAP 187

Query: 214 -QGRADAL 220
            +GR   L
Sbjct: 188 REGRVQDL 195