Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

Subject, 808 a.a., DNA gyrase subunit B from Xanthobacter sp. DMC5

 Score =  401 bits (1030), Expect = e-116
 Identities = 237/560 (42%), Positives = 325/560 (58%), Gaps = 25/560 (4%)

Query: 4   PSASAYNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHARSV 59
           PS   Y A +I+VL GLD VRKRPGMY     D S  +H+  EV+DN++DEALAG A+ V
Sbjct: 8   PSPDDYGAQSIQVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGWAKEV 67

Query: 60  QVILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVG 119
            V L A+ S+ V+DDGRG+P D+HPEEGVS  E+I+T+LHAGGKF+  +Y+ SGGLHGVG
Sbjct: 68  TVTLEANGSVTVTDDGRGIPTDLHPEEGVSAAEVIMTQLHAGGKFNQNSYKVSGGLHGVG 127

Query: 120 ISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDPKYFD 179
           +SVVNALST + + + RDG E+ M F  G   + L+VVG+      GT V F P P+ F 
Sbjct: 128 VSVVNALSTTLDLTIWRDGKEHYMRFRHGDAEAPLKVVGTAPAGKRGTKVTFLPSPETFT 187

Query: 180 SPKFSISRLKHVLKAKAVLCPGLLVSFEDKASGE--KVEWHYEDGLRSYLVDSVNEFQRL 237
             +F  + L+H L+  A L  G+L+   D    E  + E HYE G+ +++         L
Sbjct: 188 RIEFDYATLEHRLRELAFLNSGVLIVLTDARGPEPKREELHYEGGVEAFVKYLDRNKTAL 247

Query: 238 PDEPFCGSLAGNKEAVDWALLWLPEGGDSIQES---YVNLIPTAQGGTHVNGLRQGLLDA 294
             +P       +   V+ AL W     D   E+   + N IP    GTH  G    L   
Sbjct: 248 IAKPVVIRAEKDGITVEAALSW----NDGYHENVLCFTNNIPQRDRGTHFTGFAAAL--- 300

Query: 295 MREFCEFRNL--LPRGVKLAP--EDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFV 350
            R+   + N   + +  K+ P  ED  E +T VLS+K+ DP+FS QTK++L S E    V
Sbjct: 301 TRQVLGYANTSGISKKEKVDPTGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360

Query: 351 SGVVKDAFSLWLNAHPELGMQLAELAISNAGRR---LKASKKVERKRITQGPALPGKLAD 407
             +V +A + W   +P     +    +  A  R    KA     RK      +LPGKLAD
Sbjct: 361 ENLVGEALANWFEENPVEAKNVIGKVVEAAAAREAARKARDLTRRKSPLDVASLPGKLAD 420

Query: 408 CAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHN 467
           C  +DP ++E+F+VEGDSAGGSAKQ RD+ FQA+LPLRGKILN       ++L+S+++  
Sbjct: 421 CQEKDPAKSEIFIVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERARFDKMLSSEQIGT 480

Query: 468 IAVAIGVDPGAT--DLAQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAGHVYV 525
           +  A+G   G    D+A+LRY KI I+ DAD DG HI TLL   F +    +V+AGH+++
Sbjct: 481 LITALGTGIGRDDFDIAKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPEIVDAGHLFI 540

Query: 526 AMPPLYRIDLGKEIYYALDE 545
           A PPLY++  GK   Y  DE
Sbjct: 541 AQPPLYKVARGKSETYLKDE 560



 Score = 53.5 bits (127), Expect = 4e-11
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 13/103 (12%)

Query: 522 HVYVAMPPLYRID-LGKEIYYAL----------DEAERDGILDRLVAEKKRGKPQVT--R 568
           H ++A P   R+D L +++              DE    G +D   A    G+  ++  R
Sbjct: 684 HAFIASPEARRLDTLARDLDGVFAAAATLKRRSDEQVLFGAVDLFDAVTDSGRKGLSLQR 743

Query: 569 FKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVEATCELMDKLL 611
           +KGLGEMNP QL ETT+D N R L+Q+ + +V+A  +L  +L+
Sbjct: 744 YKGLGEMNPEQLWETTLDINARSLLQVRVKEVDAADDLFSRLM 786