Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

Subject, 869 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Variovorax sp. SCN45

 Score =  363 bits (933), Expect = e-104
 Identities = 225/603 (37%), Positives = 339/603 (56%), Gaps = 52/603 (8%)

Query: 7   SAYNADAIEVLSGLDPVRKRPGMY----TDTSRPNHLAQEVIDNSVDEALAGHARSVQVI 62
           ++Y   +I +L GL+ VRKRPGMY    +D +  +HL  EV+DNS+DEALAGH   + V 
Sbjct: 29  NSYGEGSITILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVT 88

Query: 63  LHADHSLEVSDDGRGMP----VDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGV 118
           +H+D+S+ V+D+GRG+P    +D   E   S  E+ LT+LHAGGKF+  +Y+ SGGLHGV
Sbjct: 89  IHSDNSISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGV 148

Query: 119 GISVVNALSTQVRVRVKRDGNEYQMTFADGF------------KASELEVVGSVGKRNTG 166
           G+S VNALS  +R+ V+R+G  +++ F+ GF            + S ++++G   KR  G
Sbjct: 149 GVSCVNALSVMLRLVVRREGKIHELEFSRGFVQNRLLETVSGVEVSPMKIIGDTDKR--G 206

Query: 167 TSVYFSPDPKYF-DSPKFSISRLKHVLKAKAVLCPGLLVSFEDKASGEKVEWHYEDGLRS 225
           T V+F PD + F ++  F    L   L+  + L  G+ +  +D+ +G++ ++    G+R 
Sbjct: 207 TEVHFLPDTQIFKENNDFHYEILSKRLRELSFLNNGVRIRLKDERTGKEDDFSGAGGVRG 266

Query: 226 YL--------VDSVNEFQRLPDEPF--CGSLAGNKEAVDWALLWLPEGGDSIQESYVNLI 275
           ++        V   N F    + P    G + G    V+ A+ W     + +   + N I
Sbjct: 267 FVEFINKGKTVLHPNSFYAEGERPADTYGGIPGTHIGVEVAMQWNSGYNEQVL-CFTNNI 325

Query: 276 PTAQGGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLAPEDVWERITFVLSMKMQDPQFS 334
           P   GGTH+ GLR  +   + ++ E      +  V++  +D+ E +  VLS+K+ +P+FS
Sbjct: 326 PQRDGGTHLTGLRAAMTRVINKYIEENEFAKKAKVEVTGDDMREGLCCVLSVKVPEPKFS 385

Query: 335 GQTKERLSSREAAAFVSGVVKDAFSLWLNAHPE----LGMQLAELAISNAGRRLKASKKV 390
            QTK++L S E  A V  +V    + +L   P     +  ++ E A +    R KA +  
Sbjct: 386 SQTKDKLVSSEVRAPVEDIVGKLLTDYLQERPNDAKIICGKIVEAARAREAAR-KAREMT 444

Query: 391 ERKRITQGPALPGKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILN 450
            RK +  G  LPGKLADC  +DP   E++LVEGDSAGGSAKQ RD++FQAILPLRGKILN
Sbjct: 445 RRKGVLDGMGLPGKLADCQEKDPALCEVYLVEGDSAGGSAKQGRDRKFQAILPLRGKILN 504

Query: 451 TWEVDGGEVLASQEVHNIAVAIGVD---PGAT---------DLAQLRYGKICILADADSD 498
             +    ++L S E+  +  A+G      GAT         ++A+LRY +I I+ DAD D
Sbjct: 505 VEKARYEKLLTSNEILTMITALGTGIGRAGATTAGGGADDFNVAKLRYHRIIIMTDADVD 564

Query: 499 GLHIATLLCALFVQHFRTLVEAGHVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAE 558
           G HI TLL   F +    LVE GH+Y+A PPLY++ +GKE  Y  D    D  L ++  +
Sbjct: 565 GAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKVGKEEQYLKDGPALDAFLLKVALK 624

Query: 559 KKR 561
             R
Sbjct: 625 DAR 627



 Score = 52.4 bits (124), Expect = 8e-11
 Identities = 25/45 (55%), Positives = 34/45 (75%), Gaps = 1/45 (2%)

Query: 555 LVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDD 599
           L++E +R   +  R+KGLGEMNP QL ETTMDP  RRL+++ +DD
Sbjct: 791 LISEAERATSR-QRYKGLGEMNPEQLWETTMDPTVRRLLRVQIDD 834