Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

Subject, 665 a.a., DNA topoisomerase IV subunit B (EC 5.99.1.3) from Variovorax sp. SCN45

 Score =  587 bits (1513), Expect = e-172
 Identities = 321/656 (48%), Positives = 431/656 (65%), Gaps = 24/656 (3%)

Query: 2   ANPSASAYNADAIEVLSGLDPVRKRPGMYTDTSRPNHLAQEVIDNSVDEALAGHARSVQV 61
           ++ ++S Y+  +I VL GL+PV++RPGMYT T  P H+ QEVIDN+ DEALAGH + ++V
Sbjct: 11  SSSASSGYSEGSIRVLKGLEPVKQRPGMYTRTDNPLHIIQEVIDNAADEALAGHGKKIKV 70

Query: 62  ILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKF---SNKNYQFSGGLHGV 118
            LHAD S+ + DDGRG+P  +HPEE    VEL+ T+LHAGGKF   S   Y FSGGLHGV
Sbjct: 71  TLHADGSVSIEDDGRGIPFGLHPEEKAPVVELVYTRLHAGGKFDKGSGGAYSFSGGLHGV 130

Query: 119 GISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVG-SVGKRNTGTSVYFSPDPKY 177
           G+SV NALS ++ V   R+G+  ++ F+ G    +LEV     G+R  GT+V   PD KY
Sbjct: 131 GVSVTNALSKRLEVSTHREGSIAKLAFSGGDVIEQLEVRKLEAGERKQGTTVRAWPDAKY 190

Query: 178 FDSPKFSISRLKHVLKAKAVLCPGLLVSFEDKASGEKVEWHYEDGLRSYLVDSVNEFQRL 237
           F++    +  L H+L++KAVL PG+ V+  ++ + E  +W Y+ GL  YL+ ++N    +
Sbjct: 191 FETAALPMGELTHLLRSKAVLMPGVSVTLTNEKTKESQQWLYKGGLSDYLMQTLNGDPVI 250

Query: 238 PDEPFCGSLAGNK------EAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHVNGLRQGL 291
           P     G    N       E  DW + +  E G  ++ESYVNLIPT+ GGTH +GLR GL
Sbjct: 251 PLFEGGGHADKNADNFAEGEGADWCVAFT-EDGQPVRESYVNLIPTSAGGTHESGLRDGL 309

Query: 292 LDAMREFCEFRNLLPRGVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFVS 351
             A++ F E  +LLP+GVKL PEDV+ R ++VLS K+ DPQF GQ KERL+SR+A   VS
Sbjct: 310 FTAVKGFIELHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQIKERLNSRDAVRLVS 369

Query: 352 GVVKDAFSLWLNAHPELGMQLAELAISNAGRRLKASKKVERKRITQGPALPGKLADCAGQ 411
             V+ A  LWLN H + G +LAELAI  A  R +A +KVE+++ +    LPGKL DC  +
Sbjct: 370 SFVRPALELWLNQHVDYGKKLAELAIKAAQTRQRAGQKVEKRKGSGVAVLPGKLTDCESK 429

Query: 412 DPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVA 471
           D    E+FLVEGDSAGGSAK  RDKE QAILPLRGK+LNTWEV+   + A+ E+H+I+VA
Sbjct: 430 DISHNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERDRLFANTEIHDISVA 489

Query: 472 IGVDP----GATDLAQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAGHVYVAM 527
           +GVDP       D++ LRYGKICIL+DAD DG HI  LL  LF +HF  L+EAGHVYVA 
Sbjct: 490 VGVDPHGPNDTPDMSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKLIEAGHVYVAK 549

Query: 528 PPLYRIDL---GKE---IYYALDEAERDGILDRLVAEKKR-GKPQVTRFKGLGEMNPPQL 580
           PPL+R+D    GK+     YALDE E    LD+L  +  R G   ++RFKGLGEM+  QL
Sbjct: 550 PPLFRVDAPARGKKPASKVYALDEGELTATLDKLRKDGVREGAWSISRFKGLGEMSAEQL 609

Query: 581 RETTMDPNTRRLVQLTLD--DVEATCELMDKLLAKKRAGDRKSWLETKGNLAEVMV 634
            ETT++P+TRRL+Q+ L   D  +T   + KL+ K  A  R+  +E + +  ++ V
Sbjct: 610 WETTLNPDTRRLMQVQLGRFDFTSTQGEITKLMGKGEAAARRELMELRADDVDIDV 665