Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

Subject, 805 a.a., DNA gyrase subunit B from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  380 bits (977), Expect = e-109
 Identities = 224/551 (40%), Positives = 325/551 (58%), Gaps = 21/551 (3%)

Query: 9   YNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHARSVQVILH 64
           Y++ +I+VL GLD VRKRPGMY     D S  +H+  EV+DNS+DEALAGH   + +I+H
Sbjct: 7   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIH 66

Query: 65  ADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVN 124
            D S+ V D+GRG+PVD+H EEGVS  E+I+T LHAGGKF + +Y+ SGGLHGVG+SVVN
Sbjct: 67  PDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 126

Query: 125 ALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDPKYFDSPKFS 184
           ALS  + + V+R G  ++ T+  G     +++VG     +TGT ++F P  + F +  FS
Sbjct: 127 ALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGE--SDSTGTQIHFKPSAETFKNIHFS 184

Query: 185 ISRLKHVLKAKAVLCPGLLVSFEDKASGEKVEWHYEDGLRSYLVDSVNEFQRLPDEPFCG 244
              L   ++  + L  G+ +  +D+ SG++  + YE GLR++ V+ +N  +   +E F  
Sbjct: 185 WDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAF-VEYLNTNKTPVNEVFHF 243

Query: 245 SLAGNKE-AVDWALLWLPEGGDSIQES---YVNLIPTAQGGTHVNGLRQGLLDAMREFCE 300
           ++  +    V+ AL W     DS  E+   + N IP   GGTH+ G R  L   +  + E
Sbjct: 244 NIQRDDGIGVEIALQW----NDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIE 299

Query: 301 FRNLLPR-GVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFVSGVVKDAFS 359
              L  +  V    +D  E +T ++S+K+ DP+FS QTK++L S E    V   +   FS
Sbjct: 300 QEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFS 359

Query: 360 LWLNAHPELGMQLAELAISNAGRR---LKASKKVERKRITQGPALPGKLADCAGQDPMRA 416
            +L  +P     +    I  A  R    KA +   RK       LPGKLADC  +DP  +
Sbjct: 360 DFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALS 419

Query: 417 ELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIGVDP 476
           EL+LVEGDSAGGSAKQ R++  QAILPL+GKILN  +    ++++SQEV  +  A+G   
Sbjct: 420 ELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 479

Query: 477 GATD--LAQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAGHVYVAMPPLYRID 534
           G  +  + +LRY  I I+ DAD DG HI TLL   F +    L+E G++Y+A PPLY++ 
Sbjct: 480 GREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVK 539

Query: 535 LGKEIYYALDE 545
            GK+  Y  D+
Sbjct: 540 KGKQEQYIKDD 550



 Score = 54.3 bits (129), Expect = 2e-11
 Identities = 25/57 (43%), Positives = 41/57 (71%), Gaps = 1/57 (1%)

Query: 555 LVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVEATCELMDKLL 611
           L+AE  + +  + R+KGLGEMNP QL ETTMDP+ RR++++T++D     ++ + L+
Sbjct: 727 LMAESTK-RHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGADQIFNTLM 782