Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

Subject, 838 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Sphingobium sp. HT1-2

 Score =  384 bits (985), Expect = e-110
 Identities = 234/574 (40%), Positives = 332/574 (57%), Gaps = 38/574 (6%)

Query: 3   NPSASAYNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHARS 58
           +P+++ Y AD+I+VL GLD VRKRPGMY     D S  +H+  EV DN++DEALAGH   
Sbjct: 11  SPNSNEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCDR 70

Query: 59  VQVILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKN----YQFSGG 114
           + + L+ D+S+ V D+GRG+P  IH EEGVS  E+I+T+LHAGGKF N +    Y+ SGG
Sbjct: 71  IVITLNPDNSVSVEDNGRGIPTGIHKEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVSGG 130

Query: 115 LHGVGISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPD 174
           LHGVG+SVVNALS  + + + RDG E+ M FA G   + L+V+G   +   GT V F   
Sbjct: 131 LHGVGVSVVNALSEWLDLNIWRDGKEHWMRFAYGDATAPLKVIGDAPEGKKGTRVTFLAS 190

Query: 175 PK--------YFDSPKFSISRLKHVLKAKAVLCPGLLVSFEDKASGEK--VEWHYEDGLR 224
            +        + +  ++   +L+H  +  A L  G+ +   D    EK  VE +YE G+ 
Sbjct: 191 TEKVPGDGGTFKNQTEYDFDKLEHRYRELAFLNSGVRLFLVDARHEEKKEVELYYEGGIA 250

Query: 225 SYLVDSVNEFQRLPDEPFCGSLAGNKE--AVDWALLWLPEGGDSIQES---YVNLIPTAQ 279
           +++         L  +P   ++AG ++   +D AL W     DS  E+   + N IP   
Sbjct: 251 AFVKYLDRNKNALMPDPI--AIAGTRDDVTIDVALEW----NDSYYENVLCFTNNIPQRD 304

Query: 280 GGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLAPEDVWERITFVLSMKMQDPQFSGQTK 338
           GGTH+   R  L   +  + E   LL +  V L  ED+ E +T ++S+K+ DP+FS QTK
Sbjct: 305 GGTHLAAFRAALTRTLNSYAEKTGLLKKEKVSLTGEDMREGLTAIVSVKLPDPKFSSQTK 364

Query: 339 ERLSSREAAAFVSGVVKDAFSLWLNAHPELGMQLAELAISNAGRRLKASKKVE---RKRI 395
           ++L S E    +  ++ D  + WL  +P  G  + +  I  A  R  A +  E   RK  
Sbjct: 365 DKLVSSEVRQPLESLMADKMAEWLEENPGHGKMIVQKVIDAAAAREAAKRARELTRRKGA 424

Query: 396 TQGPALPGKLADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVD 455
               +LPGKLADC  +DP ++ELFLVEGDSAGGSAKQ R++  QAILPL+GKILN     
Sbjct: 425 MDIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKGKILNVERAR 484

Query: 456 GGEVLASQEVHNIAVAIGVDPGATD---LAQLRYGKICILADADSDGLHIATLLCALFVQ 512
             ++L+S+EV  +  A+G   G  D   L +LRY KI I+ DAD DG HI TLL   F +
Sbjct: 485 FDKMLSSKEVGTLIQAMGT--GIRDDFNLDKLRYHKIVIMTDADVDGAHIRTLLLTFFYR 542

Query: 513 HFRTLVEAGHVYVAMPPLYRIDLGKEIYYALDEA 546
               ++EAGH+++A PPLY+   G+   Y  DEA
Sbjct: 543 QMPQIIEAGHLFIAQPPLYKASRGRSEVYLKDEA 576



 Score = 48.1 bits (113), Expect = 2e-09
 Identities = 21/61 (34%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 551 ILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVEATCELMDKL 610
           +L+ +++  ++G   + R+KGLGEMN  QL ETT+DP+ R ++++ ++  +   E+  KL
Sbjct: 756 LLEAILSAGRKGL-SIQRYKGLGEMNAEQLWETTLDPDNRSMLRVEVEQADVADEIFTKL 814

Query: 611 L 611
           +
Sbjct: 815 M 815