Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

Subject, 634 a.a., Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  244 bits (623), Expect = 8e-69
 Identities = 189/598 (31%), Positives = 294/598 (49%), Gaps = 67/598 (11%)

Query: 9   YNADAIEVLSGLDPVRKRPGMYT----DTSRPNH----LAQEVIDNSVDEALAGHARSVQ 60
           Y  D+I  L   + +R RPGMY     D S  +     L +E++DNS+DE + GH R++ 
Sbjct: 8   YTEDSIRSLDWKEHIRLRPGMYIGKLGDGSAQDDGIYVLVKEILDNSIDEHMMGHGRTID 67

Query: 61  VILHADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGI 120
           + + ++H +E+ D GRG+P+          V   ++K++ GGK+ +  +Q S GL+GVG 
Sbjct: 68  IKI-SEHKVEIRDYGRGIPL--------GKVVDCVSKINTGGKYDSGAFQKSVGLNGVGT 118

Query: 121 SVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDPKYFDS 180
             VNALS   +V+  RDG      F  G    +  V  S  +   GT + FSPD   F +
Sbjct: 119 KAVNALSQYFKVQSYRDGETKIAEFEKGELIEDRPVEKSSDRN--GTKIVFSPDATVFKN 176

Query: 181 PKFSISRLKHVLKAKAVLCPGLLVSFEDKASGEKVEWHYEDGLRSYLVDSVNE-FQRLPD 239
             F    L++ +   A L  GL ++F  K      ++  + GL   L   V++  +R P 
Sbjct: 177 YHFIPEYLENQIWNYAFLNSGLTINFNGK------KYFSDKGLHDLLDRKVDDDSKRYP- 229

Query: 240 EPFCGSLAGNKEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHVNGLRQGLLDAMREFC 299
                 L GN   ++ AL    + G+    S+VN   T QGGTH+   R+ ++ A+REF 
Sbjct: 230 ---IIHLKGND--IEMALTHTNQYGEEYH-SFVNGQYTTQGGTHLAAFREAIVKAVREFF 283

Query: 300 EFRNLLPRGVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAA-------AFVSG 352
           +              D+ + I   +++++Q+P F  QTK +L S            FV+ 
Sbjct: 284 K--------KDYDAADIRQSIAAAIAVRVQEPVFESQTKTKLGSHSVGPDGPTLRTFVND 335

Query: 353 VVKDAFSLWLNAHPELGMQLAELAISNAGRRLKAS--KKVERKRITQGPALPGKLADC-A 409
            VK     +L+ + E    L +  + +   R + S  KK+  +R  +      KL DC  
Sbjct: 336 FVKTELDNYLHKNQETANALLKRILQSERERKEISGIKKLANERAKKANLHNRKLRDCRV 395

Query: 410 GQDPMRAE--------LFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLA 461
             D ++A         LF+ EGDSA GS  ++RD + QA+  LRGK LN + +    V  
Sbjct: 396 HYDDVKANEEKKNDTMLFITEGDSASGSITKSRDVQTQAVFSLRGKPLNCFGMTKKVVYE 455

Query: 462 SQEVHNIAVAIGVDPGATDLAQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAG 521
           ++E + +  A+ ++ G   L   RY KI I  DAD DG+HI  L+   F+Q F  LV+ G
Sbjct: 456 NEEFNLLQHALNIEDGVDGL---RYRKIVIATDADVDGMHIRLLIMTYFLQFFPELVKNG 512

Query: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQ 579
           H+Y+   PL+R+   KE  Y   E E+     R    K   KP++TRFKGLGE++P +
Sbjct: 513 HLYILDTPLFRVRNKKETIYCYSEDEK-----RKAIAKLGNKPEITRFKGLGEISPEE 565