Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

Subject, 710 a.a., DNA gyrase subunit B from Agrobacterium fabrum C58

 Score =  444 bits (1141), Expect = e-129
 Identities = 268/632 (42%), Positives = 374/632 (59%), Gaps = 27/632 (4%)

Query: 3   NPSASAYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHARSV 59
           +PS+  Y A +I VL GL+PVR RPGMY   TD    +HL  EVIDNS+DEA+AGHA  +
Sbjct: 66  SPSSDDYGASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFI 125

Query: 60  QVILHADHSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGLHGV 118
           +V L A+  L V+D+GRG+PV+ HP+  G S +E+I+TKLHAGGKF  K Y+ SGGLHGV
Sbjct: 126 EVHLDAEGFLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFDGKAYETSGGLHGV 185

Query: 119 GISVVNALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDPKYF 178
           G+SVVNALS  + V V R+   Y+  F+ G     LE +G V  R  GT V F PDP+ F
Sbjct: 186 GVSVVNALSDLLEVEVARNRKLYRQRFSRGAPIGGLEELGDVHNRR-GTRVRFHPDPQIF 244

Query: 179 -DSPKFSISRLKHVLKAKAVLCPGLLVSFE--------DKASGEKVEWHYEDGLRSYLVD 229
            D  KF  +R+  + ++KA L  G+ + +         D    EK  +H+  GL+ YL  
Sbjct: 245 GDHAKFEPARIFRMARSKAYLFGGVEIRWSCDPGMVPADGEIPEKAVFHFPGGLKDYLAA 304

Query: 230 SVNEFQRLPDEPFCGSL--AGNKEAVDWALLWLPEGGDSIQESYVNLIPTAQGGTHVNGL 287
           ++ +   +  E F G     G   A++WA+ W   GGD+   SY N IPT +GGTH  G 
Sbjct: 305 TLGKEFTVTREIFSGRTEKTGGHGALEWAVTWY--GGDTQIHSYCNTIPTPEGGTHEAGF 362

Query: 288 RQGLLDAMREFCEFRNLLPRGVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAA 347
           R  L   ++ + E      R  ++  +DV      +LS+ +++P+F GQTK++L++ EA 
Sbjct: 363 RIALTKGLKNYAELTQN-KRAREITTDDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQ 421

Query: 348 AFVSGVVKDAFSLWLNAHPELGMQLAELAISNAGRRLKA--SKKVERKRITQGPALPGKL 405
             V   ++D F  +L  +P    +L +  I  A  RL+    K+V RK   +   LPGKL
Sbjct: 422 RIVENALRDPFDHYLTGNPGEAAKLLDWVIERAEERLRRRKEKEVNRKTAVRKLRLPGKL 481

Query: 406 ADCAGQDPMRAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEV 465
           ADC+      AELF+VEGDSAGGSAKQAR++  QAILPLRGKILN       ++ A+Q++
Sbjct: 482 ADCSQNTAENAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVGSASREKLSANQQI 541

Query: 466 HNIAVAIGVDPGATDLAQ-LRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAGHVY 524
            ++  A+G         + LRY +I I+ DAD DG HIA+LL   F Q    L+   H+Y
Sbjct: 542 ADLIQALGCGTRTKYREEDLRYERIIIMTDADVDGAHIASLLITFFYQEMPELIRGNHLY 601

Query: 525 VAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETT 584
           +A+PPLY I  G +  YA D+A R  +++ +   K   K ++ RFKGLGEM   QL+ETT
Sbjct: 602 LAVPPLYVIRQGAKSAYARDDAHRAELMETVFKGK---KVEIGRFKGLGEMMAAQLKETT 658

Query: 585 MDPNTRRLVQLTLDDV--EATCELMDKLLAKK 614
           MDP  R L+++ +DDV  E T E +D L+  K
Sbjct: 659 MDPEKRTLLRVEIDDVDFEGTREAVDNLMGTK 690