Pairwise Alignments

Query, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

Subject, 811 a.a., DNA gyrase subunit B from Agrobacterium fabrum C58

 Score =  411 bits (1057), Expect = e-119
 Identities = 248/595 (41%), Positives = 344/595 (57%), Gaps = 29/595 (4%)

Query: 9   YNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHARSVQVILH 64
           Y AD+I+VL GLD VRKRPGMY     D S  +H+  EV+DN++DEALAGHA  V V L+
Sbjct: 15  YGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADLVTVTLN 74

Query: 65  ADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVN 124
           AD S+ V+D+GRG+P DIH  EGVS  E+I+T+LHAGGKF   +Y+ SGGLHGVG+SVVN
Sbjct: 75  ADGSVTVTDNGRGIPTDIHSSEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVN 134

Query: 125 ALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDPKYFDSPKFS 184
           ALS  +++R++R+G  +++ F  G   + L V+G    R +GT V F   P+ F    + 
Sbjct: 135 ALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGR-SGTEVTFLASPQTFTMTDYD 193

Query: 185 ISRLKHVLKAKAVLCPGLLVSFEDKASGE--KVEWHYEDGLRSYLVDSVNEFQRLPDEPF 242
              L+H L+  A L  G+ +   DK   +  + E  Y+ GL +++       + L D+P 
Sbjct: 194 YGTLEHRLRELAFLNSGVRILLTDKRHSDVKQQELLYDGGLEAFVRYLDRAKKPLVDKPI 253

Query: 243 CGSLAGNKEAVDWALLWLPEGGDSIQES---YVNLIPTAQGGTHVNGLRQGLLDAMREFC 299
                 +   V+ AL W     DS  E+   + N IP   GGTH+ G R  L   +  + 
Sbjct: 254 AIHSEKDGITVEVALWW----NDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQVTSYA 309

Query: 300 EFRNLLPR-GVKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFVSGVVKDAF 358
           +   ++ R  V L  ED  E +T +LS+K+ DP+FS QTK++L S E    V  +V +A 
Sbjct: 310 DTSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEAL 369

Query: 359 SLWLNAHPE----LGMQLAELAISNAGRRLKASKKVERKRITQGPALPGKLADCAGQDPM 414
           S WL  HP     L  ++ E A++    R KA +   RK      +LPGKLADC+ +DP 
Sbjct: 370 STWLEEHPSEAKILIGKVVEAAVAREAAR-KARELTRRKGALDIASLPGKLADCSERDPA 428

Query: 415 RAELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIGV 474
           ++ELFLVEGDSAGGSAKQ R +E QAILPLRGKILN       ++L+SQE+  +  A+G 
Sbjct: 429 KSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 488

Query: 475 DPGATDL--AQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAGHVYVAMPPLYR 532
             G  +    +LRY KI I+ DAD DG HI TLL   F +    L+E GH+Y+A PPLY+
Sbjct: 489 SIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPLYK 548

Query: 533 IDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMN-PPQLRETTMD 586
           +  GK + Y  DE   +  L  +      G  + +   G GE+     LRE  +D
Sbjct: 549 VTRGKSVQYLKDEKALEEYLISM------GIEEASLTLGTGEVRVGADLREVILD 597



 Score = 50.4 bits (119), Expect = 3e-10
 Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 8/129 (6%)

Query: 505 LLCALFVQHFRTLV-EAGHVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGK 563
           LL +   +H   LV     +Y   P L R D   E+      A    +LD + A  ++G 
Sbjct: 688 LLGSADARHIDQLVARTRDIYATPPVLQRKDGSMEL------AGPRALLDAIFAAGRKGL 741

Query: 564 PQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVEATCELMDKLLAKKRAGDRKSWL 623
             + R+KGLGEMN  QL ETT+D N R L+Q+ ++D      L  +L+  +    R    
Sbjct: 742 -SMQRYKGLGEMNAEQLWETTLDANVRSLLQVRVNDATDADGLFARLMGDEVEPRRDFIQ 800

Query: 624 ETKGNLAEV 632
           E   N+A +
Sbjct: 801 ENALNVANL 809